Microsatellites /Tandem Repeats database

Genome: Methanococcus jannaschii

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
32479AAAATAGAATAAAATAATATAATATDesign primers
55040AAAAAAATAAAAGAAATAAAAATAADesign primers
102873AAAAAATTAGAAAACAAATTAGGAAAAAAATTAAAADesign primers
119930TAATCTTTCCAATCTTTCTAATATTTCDesign primers
175128AAAATAAAACAGAATAAAATAAAAGDesign primers
205661AAATATAAATGAATAAAAATAAATTAAAATDesign primers
233664CTTTTTTATTATTTTTCTATTAATTTTTAATTADesign primers
260480AAAATT-AAAATT-AAAAAT-AAAATG-AAAATTDesign primers
262122ATATGGCTTTTTACATGGCTTTTCTTCTGGCTTTTTDesign primers
287776AAAAATAAAAAATAAAAAAGAGAAADesign primers
325847AAAAGAATAC-AAAAGAATAC-AAAGTAATACDesign primers
325878CAATAGAATACACTAAAATACAATGDesign primers
352286TTATTTTTATGTTGATTTGTATTTDesign primers
387087AA-AA-AA-TA-AA-AA-AA-GA-AA-AA-TA-AA-ADesign primers
439685TAATTTTAATATTAATTTAAATTTDesign primers
448457TATCTTCTTCCTTCTTCTCTTCTTTTTTCTCTTCTTCTTTCTTCTDesign primers
448521AGCTGCAGCAGCTGGAGCAGCTGCAACDesign primers
448886TATCTTCTTCTTTCTTCTCTTCCTCTTTTTTCTCTTCTTCTTTCTDesign primers
466912AGATAA-AGATAA-AGAGAA-AGAAAADesign primers
527976TTTTTTGTTTATTTTTTTATTTTATDesign primers
551125ATTAAAAAATTTAAAAGTTAAAAADesign primers
594666ATTAATTTAAAATAAATAAAATAAAATTTADesign primers
605258TAATT-TTATT-TTATT-TATTT-TATTT-TTATTDesign primers
621285AAAGAAAAAAAAGGATAAGAAAAAADesign primers
634294AAACATATTAAAACTTTTTAAAACTTTTTADesign primers
673649TTAAAAAAATAAAAAAGTAAAAAADesign primers
710348AA-AA-AA-TA-AA-GA-AA-AA-GA-AA-TA-AA-ADesign primers
750785TAATTTTTTTATTTTTAAATTTTTDesign primers
781971TTTGCTATTGTTTGTTATTATTTGATATGGDesign primers
782324CTTAATTAATGTTAATTATTCTTATTTTATDesign primers
787488TTTAAT-TTTAAT-TCTAAT-TTTATTDesign primers
805902TTAAAAAATCATTAAAAATCTTAAAAAAAGDesign primers
814798ATTTTTATTTATTTTTTTATGTTTAATTTTDesign primers
823942AAAATTAAAAAAAAAGAAAAAAAATTAGATDesign primers
862417AA-TT-TT-TT-AA-AT-TT-TT-AT-TT-TT-TTDesign primers
877489TAAAAATAGAAATAAAAGTAAAAGDesign primers
888247CCCAAACCCAAGCCAAAACCAAAADesign primers
904305ATG-ATG-ATG-GTG-GTG-ATG-ATG-GTGDesign primers
938202AA-TT-TT-TT-AA-CT-TT-TT-TA-TT-TT-TTDesign primers
994964AGAGACAGAAACAGGGACAGATACDesign primers
1002076TT-TC-TT-TT-AA-TA-TT-TT-TT-TA-AT-TT-TC-TC-TT-TA-TDesign primers
1061747ATTTTATAATTTTGTAATATTATADesign primers
1089649AA-AA-AA-AA-GA-AA-TA-AA-GA-AA-AA-TA-ADesign primers
1089893ATAAAATGAAAGAAAATATATTAAAACAAADesign primers
1171093TTGAAATTTAAATTAAAATTAAAADesign primers
1200047AAAACATAAAAAACTTAAAAAACCTAADesign primers
1202527AAAAAGAAAAGGAGAAAGAAGAAGAAAAACDesign primers
1210367ATTACTATTATTATTACTAATACTDesign primers
1217682TAAAAAATTTTTAAAATTTTTAAATATTTTDesign primers
1228723TTTTAATATTTTTTATATTTTTAATACDesign primers
1291234AATATCAATAACATTATCAACATCDesign primers
1298232TTTAAAAATTAAAAAATTTAAATADesign primers
1304766ATAAAAATAAATACAAAAATAATAATAAATDesign primers
1315898TAAAAAATTAAAAATTTTAAAAATDesign primers
1436483TATATTATTATATGATTATAGTATDesign primers
1440300TTTTAATATATTTTTTTATATTTTATTACADesign primers
1465596AA-TA-TA-AA-AA-TA-GA-AA-AA-TA-TA-TADesign primers
1500201CTTATATTTTTATATTCTTATTTTDesign primers
1509863TCTTTTTCTTCTTCTTTCTCCTTTTCTTTADesign primers
1516429AAAATAAAAATAAAAACAACAATADesign primers
1527998TGAAGATGTAGATGAGGATGAAGCDesign primers
1540589AGAAGAGGAAGAAGAAAAAGAAGADesign primers
1547781TCAATATTATTTCAAAATTATTTCAAAAATATTDesign primers

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