Microsatellites /Tandem Repeats database

Genome: Buchnera sp. APS

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
9569TAATTTTTTTAAATTTTTTAAGTTTTTDesign primers
13621ATTTTTATTATTATTATTATTTTCADesign primers
26156ATATTTCTTTAATATTTTTTTTATTTTTCTCTAATADesign primers
27584TTTTTTTTTTATTTGTTTTTTTTATDesign primers
41611TT-TT-TC-TA-TT-TC-TT-TT-TT-TT-TG-TC-TT-TT-TG-TT-TDesign primers
60538CTGCATCTTCATCTGTATCTGTATDesign primers
62672ATATAATTTTATAATTATAGAATTDesign primers
71991ATTTTTATTTATATTATTATTTTTDesign primers
121740AAAAAGAACAAGAAAAAAAAAAATADesign primers
121805AAAAAAAATCATATAAAATCAAAAATAAACDesign primers
161776CCACCAAAAATATCACCAAAAACATCCCCAAAAATADesign primers
172952TT-TT-TT-TT-AT-TT-TT-CT-TT-TT-AT-TT-TDesign primers
181862TTTTTTTCATTATTATTTCATTTTTTTTTGGTTTDesign primers
200901TTTTTTTATTTTTTCTATTTTTTCTTDesign primers
211408TTTTTTTATAATTTTTTCTATTTCTTTATGDesign primers
215276AAATATAATTAAATATTTTTTTATATAATTDesign primers
232706TTTTTTATTTCTTTTTTTATTATTTTTTTATDesign primers
238088TTTATTATATTTTTTTTTAGTTTTTTDesign primers
273747TTATTAATTTTTAATTATTTATTADesign primers
284301TT-TT-AT-TT-TT-TG-AT-TT-TT-CT-AT-TT-TT-TDesign primers
286320AAATATTTTTTATTATTTTTATAAATTTTTAADesign primers
293833AAACTAAAAAAGAAACAAAAGAAGAAAATAAAATAGADesign primers
308563AA-AA-AA-CA-AA-AA-GA-AA-AA-AA-TA-AA-AADesign primers
313002TTATTATATTAATATATTATTATADesign primers
336430AATAATAAAAATAATAATAATAAGDesign primers
351896ATTATG-AATATG-ATTATG-ATTATG-ATDesign primers
357205ATAAATTAAAATAACATAAAAAAAADesign primers
359827AAACAAAAAACAACAAATAAAAAADesign primers
364707ATAGAAAAAAAAAAAAAAAAATACAAACAAADesign primers
366151GTATAGAATAAATATTATATAATAAATATTATATAATAAATADesign primers
382292AATAAATAAAAATTAAAAAAATTAATTAAAAATADesign primers
383727AATAATAAATATTATTATAAATATTATTATAAATATDesign primers
389617TTATT-ATATT-ATATT-TTATT-TTATT-TDesign primers
410135CGCTCGACC-TGCTCGACC-TGCTCGACCDesign primers
417820CT-CT-AT-TT-TT-TC-TA-TA-TT-TT-TT-AT-GT-AT-TT-TT-TDesign primers
425717ATTTTTATAAAATTTAATAATTTTTTACAAADesign primers
428479AGATGGTGGAAATGGTGGAGATGGTGGADesign primers
434828ATA-AAA-AAA-AAA-TAT-TAA-AAA-AAG-AAG-AAA-AAADesign primers
434879AAAAAAAAATAAAATTAAAAAATAADesign primers
441148AA-AA-GA-AA-AA-CA-AG-AA-AA-AA-TA-GA-AA-ADesign primers
445236ATCAAATT-ATCAAATT-ATCAAAAT-ADesign primers
469132AA-AA-AA-AA-AT-TA-AA-AA-AA-AT-AT-AA-ADesign primers
482572AAATTTATTAAAATCAATTATAAATTATTADesign primers
493946ATAAAAAAAAATAAGATAATATAATDesign primers
501788AAAAAAATAAATAAAAAAACAACAAADesign primers
511967GTTTTATTTTGTTTTAATATATTTTTTTTTGDesign primers
518953GAAAAAAA-TAAAAAAA-TAAAAAAADesign primers
525697AAAAAACAAATAAAACAAAAAAAATDesign primers
525982AAAATTAAAAAATTTAAAAATAAADesign primers
542773AAAATATTAAAAAAATATGAAAAAATTAGTAAADesign primers
567005TTTTTTAAAAAATTTTTAAATATTTTTTTAAAATDesign primers
607634TTTAAATAATTATAAATATTTTGAGATAATTDesign primers
609510TATGAAAAAATATGAAAATCAATAAAAAAADesign primers
611720AA-AA-AA-AC-AA-AA-AA-AA-TA-AA-AA-AA-AA-AA-AT-AA-ADesign primers
633010TTTTATTGTTTTATTATTTTTTTGTDesign primers
639430TTTTTTGATATTTTCTTATATTTTTAGAAATTTDesign primers

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