Microsatellites /Tandem Repeats database

Genome: Coxiella burnetii RSA 493

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
168741CAGAAGA-CAGATGA-CAGATGA-CAGAADesign primers
190122TAAGATTAAAAATAATATTAAAGATAATATTGAAAADesign primers
197665ATGGAGG-GCAGAAG-ACAGAGG-ACAGAGG-ACAGAGG-ACAGAGG-ACAGAAG-ACAGAAG-ACAGAGG-ADesign primers
259555GGACAGA-GGACAGA-AGACAGA-AGACAGA-AGACAGA-AGACAGA-AGACAGADesign primers
259605GACGGAA-GACGGAA-GACGGAA-GACGGAA-GACGGAA-GACAGAA-GACGGAA-GACGGAA-GACGGAA-GACGGAA-GACGGAA-GACGGAA-GACGGAA-GACGGAA-GACGGAA-GACGGAA-GACGGAA-GACGGAA-GACGGAA-GACDesign primers
436100GACTAACT-CACTAACT-CACTAACTDesign primers
448209TCCTTGTTGCAATCCTTTTTGTAATCCTTGTTGAATTCCTTGTTGAATTCCTTGDesign primers
489646AATTAATTAATAAATTAATTCATTDesign primers
549439TTTTTC-TTTTTC-TTTCTC-TTTCTC-TTDesign primers
602436CCGCCTTCTCCACCTTCTCCGCCTTCTDesign primers
631345TCTCGAATAAGTCTA-ACTCGAATAAGTCTA-ACCCGAATAAGTTTA-TDesign primers
744298ATAAAAATATTAAAGAAATATTAAAAAAATATCDesign primers
831250AGAAAATGA-AGAAAATAA-AGAAAATAA-AGAAAATAA-AGAAAATGA-ADesign primers
838445TTGAAG-ATGAAG-ATGAAG-ATGAAGDesign primers
839729CTAAGA-CTAAGA-ATAAGA-ATAAGADesign primers
856935ATTATTATTTTTATCATTATTTTTDesign primers
930762TGA-TAA-TGA-TGA-TGA-TAA-TGA-TAA-TGDesign primers
1121230CGATGGCCATGGCGCTGGCGTTGGCTATGGDesign primers
1161098AAATAAATTAAAATAAAATTAAATTDesign primers
1205097AAGAAGAATCGGAAGAAGAATCGAAAGAAGAAGAGGDesign primers
1351033TCTTTCTTTTCTTCTTTTTTCTCTTTTTCTTTTTTCGTTTCTTTTTCDesign primers
1418084TCAGAGG-ACAGAGG-ACAGAGG-ACAGAGGDesign primers
1431182CCTCTGTCCTCTGCCTTCTGTCCTCTGTDesign primers
1435063TCTGCCC-TCTGTCT-TCTGCCC-TCTGCCC-TCTGCCC-TCTGCCT-TCDesign primers
1471837TTGAAA-AGGAAA-AGGAAA-AGGAAA-AGGAAA-AGGAAADesign primers
1555547ATATTATTTTATATTATATAATAATDesign primers
1556297TTTTTTTTCTTTCTTTTTTTTCTTTTDesign primers
1647625CCGCCCATGCCGCCCATTCCTCCCATGCCGCCCATGDesign primers
1723650TTTTTATTTCTATTTTTCATTTTATTTDesign primers
1941412AAGATAAAGAAGACAAAGAAGATAAAGAADesign primers

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