Microsatellites /Tandem Repeats database

Genome: Salmonella enterica subsp. enterica serovar Typhi

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
203CAC-CAC-CAC-CAT-TAC-CAC-CAT-CAC-CADesign primers
68484TTT-TAA-TTA-ATT-TAA-TTA-TTT-TTA-TTADesign primers
199904GGCGAGATGGATCATGGCAACATGGATCACAGCGGGATGAATCATGGCGDesign primers
217587TTATTCATTGTGTTATTAATAGTGTTATTCATGGTGTDesign primers
241792CGGCGGTAACGGCGGCAACGGCGGTCADesign primers
381556TGCTATCGCTATTACTATTGCGATDesign primers
498487GCGAAAGAGAAAGCGGAAGCGGAADesign primers
647348TGGTGGTGGTCGTGGTGCTGGCGGTDesign primers
666032AGAATA-CCAGTA-CCAGTA-CCAGTA-CCAGTA-CCAGTA-CCAGTA-CCAGTA-CCAGTADesign primers
764487ATGAGA-TTGAGA-TTGAGA-TTGAGADesign primers
1070418CCGGAG-CCGGAG-CCGGTG-CCGGAG-CDesign primers
1146208ACGAAAAATAACCAGAAATAACAAAAAACADesign primers
1312638TTATGCTGGATTATCCTGGCGTATGCGGGADesign primers
1913675CACCAAAACCAACTCCAACACAAADesign primers
2017168GAAGAAA-GAAGAAA-GAAGAAA-GAAGAAA-GAAGAAA-GAAGAAA-GAAGAAA-GAAGAAA-GAAGAAA-GAAGAAA-GAAGAAA-GAAGAATDesign primers
2156352CGGCAGGC-TGGCAGGC-TGGCAGGCDesign primers
2308442GCAGCGCCA-GCAGCGCCA-GCGGCGCCADesign primers
2532442ACGCCGTCGCACGCCGCCTCACGCAGTTGCDesign primers
2556993ATCTTTCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-AGTTCCCC-ADesign primers
2900663TATGGGTTTATGTGAGTTTATAGGGGTTTTDesign primers
2990917GTTGTGATGTTGTGTTGTTGTGTTDesign primers
3041484AACCACCATCAC-GACCACCATCAC-GACCACCATTACDesign primers
3041521ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATC-ADesign primers
3302850CGCGCGACCGGCGCGACCCGCACGACCDesign primers
3325015TCGCTT-TCGCTT-TCTCTT-CCGCTTDesign primers
3325782TCGCCGCCGTCGCCGCCATCACCGCCGTCDesign primers
3643805CAG-GCG-CAG-CAG-CAG-CAG-CAG-CAG-CAG-CAG-CAG-CAGDesign primers
3832278TGGCGCCGCTGGCGCTGCTGGCGCTGCDesign primers
3872216GCGCCCGGCGCGCCAGGCGCGCACGGCGDesign primers
3892291CCGGGTCTACTGGAT-CAGGGTCTACTGGAT-CAGGGTCCACCGGAT-CDesign primers
4423526GGTATCCAGCAGGGTATTCAGCAGAGTATTCAGCAGGDesign primers
4505518GTTTTATCTTGTTTTATGTGGTTTGATTTTDesign primers
4624283TCGTCAC-GCGTCAC-GCGTCAC-GCGTCACDesign primers
4699221TTGCTG-ATCTTG-GTGTTG-GTGTTG-GTGTTG-GTGTTG-GTGTTG-GTGTTG-GTGTTG-GTGTTG-GTGTTG-GTGTTG-GTGTTG-GTGTTG-GTGTTG-GTGTTGDesign primers

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