Microsatellites /Tandem Repeats database

Genome: Yersinia pestis KIM

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
174591GATGCAGA-GATGCAGA-GATGCAGA-GATGCAGDesign primers
305840TCATCCC-TCATCCC-TCATCCC-TCATCCC-TCATCCC-TCATCCC-TDesign primers
326616TGGTGGTT-TGGTGGTT-TGGTGGTT-TGGTGGTT-TGGTDesign primers
464817GAAGTTGAA-GAAGTTGAA-GAAGTTGAA-GAAGTTGAA-GAAGTTGAA-GAAGTTGAA-GAAGTTGAA-GAAGTTGAA-GAAGTTGAA-GAAGTTGAA-GAADesign primers
477334GATTAAC-GATTAAC-GATTAAC-GATTAAC-GATTAAC-GATTAAC-GATTAAC-GATTAACDesign primers
648329TGCTTTT-TGCTTTT-TGCTTTT-TGCTTTT-TGCTTTT-TGCTTTT-TGCTTTT-TGCTTTT-TGCTTTT-TGCTTTT-TGCTDesign primers
758294TGACGGTGG-TGACGGTGG-TGACGGTGGDesign primers
845541CTGCTCAA-CTGCTCAA-CTGCTCAA-CTGCTCAA-CTGCTCAA-CTGCTCAA-CTGCTCAA-CTGCTCAA-CTGCTCAA-CTGCTCAA-CTGCTCAA-CTGCTCAA-CTGCTCAA-CTGCTCAA-CTGCTCAA-CTGCTCAA-CTGCTCAA-CTGCTCAA-CTGCTCAA-CDesign primers
898469TAAAACTAAAGCATCGT-TAAAACTAAAGCATCGT-TAAAACTAAAGCATCGT-TAAAACTAAAGCATCGDesign primers
904737TGCTGTAGA-TGCTGTAGA-TGCTGTAGA-TGCTGTAGA-TGCTGTAGA-TGCTGTAGA-TDesign primers
934552ACTCCCTG-ACTCCCTG-ACTCCCTG-ACTCCCTG-ACTCCCTG-ACTCCCTG-ACTCCCTG-ACTCCCTDesign primers
1054992CCTTCGTCC-CCTTCGTCC-CCTTCGTCCDesign primers
1071490CACTGGCT-CACTGGCT-CACTGGCT-CACTGGCTDesign primers
1217043ATTTGCT-ATTTGCT-ATTTGCT-ATTTGCT-ATTTGCT-ATTTGDesign primers
1292741TCATCTAATACCTCAA-TCATCTAATACCTCAA-TCATCTAATACCTCAA-TCATCTAATACCTCADesign primers
1376386CTAGATCAAAACATTGA-CTAGATCAAAACATTGA-CTAGATCAAAACATTGA-CTDesign primers
1379637TCACCTG-TCACCTG-TCACCTG-TCACCTG-TCACCTDesign primers
1379672CCACCTA-CCACCTA-CCACCTA-CCACCTA-CDesign primers
1475252CGCAAAGTTGATTGT-CGCAAAGTTGATTGT-CGCAAAGTTGATTGT-CGCAAAGTTGATTGT-CGDesign primers
1511780TCACTGCG-TCACTGCG-TCACTGCG-TCACTDesign primers
1561194AAATCAGTCGTTAC-AAATCAGTCGTTAC-AAATCAGTCGTTAC-AADesign primers
1691479TTTTCAG-TTTTCAG-TTTTCAG-TTTTCADesign primers
1726783ACCGCCGGAAACCACGGC-ACCGCCGGAAACCACGGC-ACCGCCGGAAACCACGGC-ACCGCCDesign primers
1726952GAAACAACGGCACCGCCG-GAAACAACGGCACCGCCG-GAAACAACGGCACCGCCG-GAAACAACGGCACCGCCG-GAAACDesign primers
1729165TGTTTGAAATAGATTA-TGTTTGAAATAGATTA-TGTTTGAAATAGATTA-TGTTTGAAATAGATTA-TGTTTGADesign primers
1750137GCTTATTG-GCTTATTG-GCTTATTG-GCTTATTG-GCTTATTG-GCTTATTG-GCTTATTG-GCTTATTGDesign primers
1750202CTTATTGA-CTTATTGA-CTTATTGA-CDesign primers
1818804TCATCTG-TCATCTG-TCATCTG-TCATCTG-TCATCTG-TCATCTG-TDesign primers
1900581TCATCC-TCATCC-TCATCC-TCATCC-TCATCC-TCATCC-TCATCC-TCATCC-TCATCC-TCATCC-TCATCCDesign primers
1993020CATTGGCATATTGAA-CATTGGCATATTGAA-CATTGGCATATTGAADesign primers
2043797TCTA-TCTA-TCTA-TCTA-TCTA-TCTA-TCTA-TCTA-TCTA-TCTA-TCTA-TCDesign primers
2051161TTACTGATATGGGCTAA-TTACTGATATGGGCTAA-TTACTGATATGGGCTAA-TTACTGDesign primers
2179681TGTGTGA-TGTGTGA-TGTGTGA-TGTGTGDesign primers
2220683TGCTGG-TGCTGG-TGCTGG-TGCTGG-TGCTGG-TGCTGG-TGCTGDesign primers
2262446TTGTTAAATCTATCGGT-TTGTTAAATCTATCGGT-TTGTTAAATCTATCGGT-TTGTTAAATCTDesign primers
2346424TCACCTG-TCACCTG-TCACCTG-TCACCTG-TCACCTDesign primers
2494166AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AADesign primers
2503457TTGATTAG-TTGATTAG-TTGATTAG-TTGATTAG-TTGATTAG-TTGATTAG-TTGATTAG-TTGATTAG-TTGATTAG-TTGATTAG-TTGATTAG-TTGATTAG-TDesign primers
2578127ATTACTTG-ATTACTTG-ATTACTTG-ATDesign primers
2578276CTTTCTAT-CTTTCTAT-CTTTCTAT-CTTTCTATDesign primers
2588982GATGTT-GATGTT-GATGTT-GATGTT-GATGTT-GATDesign primers
2698880CAGGCACAT-CAGGCACAT-CAGGCACAT-CAGGCACAT-CAGGCACAT-CAGGCACAT-CAGGCACAT-CAGGDesign primers
2786127AGAAAAACA-AGAAAAACA-AGAAAAACA-AGAAAADesign primers
3040600GACTATCCC-GACTATCCC-GACTATCCC-GACTATCCC-GACTATCCC-GACTATCCC-GACTATCCC-GACTATCCDesign primers
3066051ACTTATGG-ACTTATGG-ACTTATGGDesign primers
3067581AATACAGGA-AATACAGGA-AATACAGGA-AATACAGGA-AATACAGGA-AATDesign primers
3095669CAATTAAC-CAATTAAC-CAATTAAC-CAATTAAC-CAATTAAC-CAATTAAC-CAATDesign primers
3195410CTCTTTTG-CTCTTTTG-CTCTTTTG-CTCTTTTG-CTCTDesign primers
3223456AACAATCTCATTACA-AACAATCTCATTACA-AACAATCTCATTACA-ADesign primers
3297987ATTACT-ATTACT-ATTACT-ATTACT-ATTACT-ATTACT-ATTACT-ATTACDesign primers
3303877TCATTGT-TCATTGT-TCATTGT-TCATTGT-TCATTGT-TCATTGT-TCATTGDesign primers
3303926TCATTGC-TCATTGC-TCATTGC-TCATTGC-TCATTGC-TCATTGC-TCATTGDesign primers
3312468TATTAAC-TATTAAC-TATTAAC-TATTAAC-TATTAAC-TATTAAC-TATTAAC-TATTAAC-TATTAAC-TATTAAC-TATTAAC-TATTAAC-TATTAAC-TATTAAC-TATTAAC-TATTAAC-TATTAAC-TATTAAC-TATTAAC-TATTAAC-TATTAAC-TATTAAC-TATTAACDesign primers
3346555TTTATCTATCTATGTTG-TTTATCTATCTATGTTG-TTTATCTATCTATGTTG-TTTADesign primers
3515478ATATCAAG-ATATCAAG-ATATCAAG-ATATCAADesign primers
3574781CACTCAATGT-CACTCAATGT-CACTCAATGT-CACTDesign primers
3654250AGCTAATTG-AGCTAATTG-AGCTAATTG-AGCDesign primers
3699828AAAATGATTG-AAAATGATTG-AAAATGATTG-AAAATGATTG-AAAATDesign primers
3700272TCACTTTCC-TCACTTTCC-TCACTTTCC-TCACTTDesign primers
3787241CCGAACAAG-CCGAACAAG-CCGAACAAG-CCDesign primers
3787280CACAAGCCA-CACAAGCCA-CACAAGCCA-CACAAGCCA-CACAAGCCDesign primers
3787343CACAAACCA-CACAAACCA-CACAAACCA-CACAAACCDesign primers
3820268ATTATTAA-ATTATTAA-ATTATTAA-ATTATTAA-ATTATDesign primers
3856540AAACGCTAT-AAACGCTAT-AAACGCTAT-AAACGCTAT-AAACGCTAT-AAACGCTAT-AAACGCTAT-AADesign primers
4163605CAATCAAC-CAATCAAC-CAATCAAC-CAATCAAC-CAATCAAC-CAATCAAC-CAATCAAC-CAATCADesign primers
4193057ACCCAAC-ACCCAAC-ACCCAAC-ACCCAAC-ACCCAAC-ADesign primers
4397557CGACAATATCAA-CGACAATATCAA-CGACAATATCAA-CGACAATATCAA-CGACAATATCAA-CGACAATADesign primers
4406103AACACC-AACACC-AACACC-AACACC-AACACC-AADesign primers
4472172GAAAAACAG-GAAAAACAG-GAAAAACAG-GAAAAACADesign primers
4489707AAGCAGTT-AAGCAGTT-AAGCAGTT-ADesign primers
4557391TGGTGGTT-TGGTGGTT-TGGTGGTT-TGDesign primers

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