Microsatellites /Tandem Repeats database

Genome: Yersinia pestis KIM

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
3780GTTGTTGAAATTGAA-TTTGTTGAAATTGAA-TTTGTTGAAATTGAA-GTTGDesign primers
51265TCTTAATCAAAAATAATAGCTCTTCATCAAAAGTAATAGCTCTTCATCAAAAATAATAGCTCDesign primers
174591GATGCAGA-GATGCAGA-GATGCAGA-GATGCAGDesign primers
260839TTTGAAGATGATGGC-TTTGAAGATGATGGC-TTTGAAGATGGTGGC-TTTGADesign primers
305839ATCATCC-CTCATCC-CTCATCC-CTCATCC-CTCATCC-CTCATCCDesign primers
326616TGGTGGTT-TGGTGGTT-TGGTGGTT-TGGTGGTT-TGGTDesign primers
373649TATTTGCGACAGACAATTTATTTACGACAGACAATTTATTTGCGACACACAATTTATTTGDesign primers
464816TGAAGTTGA-AGAAGTTGA-AGAAGTTGA-AGAAGTTGA-AGAAGTTGA-AGAAGTTGA-AGAAGTTGA-AGAAGTTGA-AGAAGTTGA-AGAAGTTGADesign primers
477332ATGATTA-ACGATTA-ACGATTA-ACGATTA-ACGATTA-ACGATTA-ACGATTA-ACGATTA-ADesign primers
648325ATTCTGC-TTTTTGC-TTTTTGC-TTTTTGC-TTTTTGC-TTTTTGC-TTTTTGC-TTTTTGC-TTTTTGCDesign primers
661460TTAGACGTCAGATTAGTTTTAGATGTCAGATTAGTTTTAGACGTCAGATTAGCTTTADesign primers
758294TGACGGTGG-TGACGGTGG-TGACGGTGGDesign primers
845537TTACCTGC-TCAACTGC-TCAACTGC-TCAACTGC-TCAACTGC-TCAACTGC-TCAACTGC-TCAACTGC-TCAACTGC-TCAACTGC-TCAACTGC-TCAACTGC-TCAACTGC-TCAACTGC-TCAACTGC-TCAACTGC-TCAACTGC-TCAACTGC-TDesign primers
898466CGCTAAAACTAAAGCAT-CGTTAAAACTAAAGCAT-CGTTAAAACTAAAGCAT-CGTTAAAACTAAAGCAT-CGCTAAAADesign primers
904736CTGCTGTAG-ATGCTGTAG-ATGCTGTAG-ATGCTGTAG-ATGCTGTAG-ATGCTGTAGDesign primers
934550TTACTCCC-TGACTCCC-TGACTCCC-TGACTCCC-TGACTCCC-TGACTCCC-TGACTCCC-TGACTCCC-TDesign primers
954268AGGTGACAATGTTTGGTTAGGTAACAATGTTTGGTTAGGTGACAATGTTTGGTCAGDesign primers
981753TGAGC-TGAAC-TGAGG-TGAAC-TGAAC-TGAAC-TGADesign primers
1044440ACGGTCCTATCAAATAACGGACCTATCAAATAGCGGTCCTATCAAATAACGGTCCTATCAAATAACDesign primers
1053635ATCAGGTGGATAGTGCTCATCAGGTGGATAGTGCGCATCAGGTGGATAGTACTCATCAGGCGGATAGTGCTCADesign primers
1054992CCTTCGTCC-CCTTCGTCC-CCTTCGTCCDesign primers
1071490CACTGGCT-CACTGGCT-CACTGGCT-CACTGGCTDesign primers
1119984GCTATACCGTAAATTCAGTAGCTATACCGTAAATTCAATGGCTATACCGTGAATTCAATAGCTATACCGTAAATDesign primers
1217043ATTTGCT-ATTTGCT-ATTTGCT-ATTTGCT-ATTTGCT-ATTTGDesign primers
1292730TAATACCTCAGTCATC-TAATACCTCAATCATC-TAATACCTCAATCATC-TAATACCTCAATCATC-TAATACCTCAGTCATCDesign primers
1312318CGACTATCAC-CAACTATCAC-CAACTATCAC-CGACTATCAC-CDesign primers
1321698TTCAACTAATCTGTTTCAACTAACCTGTTTCAACTAATCTGCTTCAACDesign primers
1373195AAAGTTACCGTAAACAGA-AAAGTTACCGTAAACAGA-AAAGTTGCCGTAAACAGA-AAAGDesign primers
1376385GCTAGATCAAAACATTG-ACTAGATCAAAACATTG-ACTAGATCAAAACATTGDesign primers
1379637TCACCTG-TCACCTG-TCACCTG-TCACCTG-TCACCTDesign primers
1379672CCACCTA-CCACCTA-CCACCTA-CCACCTA-CDesign primers
1475244TTGATTGCCGCAAAG-TTGATTGTCGCAAAG-TTGATTGTCGCAAAG-TTGATTGTCGCAAAG-TTGATTGDesign primers
1483317TGAACAGTTAATAGCAGGTGAACAGCTAATAGCAGGTCAACAGTTAATAGCAGGTDesign primers
1511780TCACTGCG-TCACTGCG-TCACTGCG-TCACTDesign primers
1561193AAAATCAGTCGTTA-CAAATCAGTCGTTA-CAAATCAGTCGTTADesign primers
1672563AAAATGCAGCTCTATCACCAAAATGCAGCTCTATCACTAAAATGCAACTCTATCACCAAAATGCAACTCTATCACCAAAATGCADesign primers
1691479TTTTCAG-TTTTCAG-TTTTCAG-TTTTCADesign primers
1726782TACCGCCGGAAACCACGG-CACCGCCGGAAACCACGG-CACCGCCGGAAACCACGGDesign primers
1726898GAAACAACGGCACCGCCAGAGACAACGGCACCGCCAGAGACAACGGCACCGCCAGAAACAACGGCACCGCCGGAAACAACGGCACCGCCGGAAACAACGGCACCGCCGGAAACAACGGCACCGCCGGAAACCACGGCACCGCCAGAGACAACGGCACCGCCAGADesign primers
1729151TTTGAAATAGATTGTG-TTTGAAATAGATTATG-TTTGAAATAGATTATG-TTTGAAATAGATTATG-TTTGAAATAGATTATG-TTTGADesign primers
1749009GACCTGTTTTGTGATGACCTGTTTTGTGACGACCCGTTTTGTGATGDesign primers
1750134TTCGCTTA-TTGGCTTA-TTGGCTTA-TTGGCTTA-TTGGCTTA-TTGGCTTA-TTGGCTTA-TTGGCTTA-TTDesign primers
1750201ACTTATTG-ACTTATTG-ACTTATTG-ACDesign primers
1818803ATCATCT-GTCATCT-GTCATCT-GTCATCT-GTCATCT-GTCATCTDesign primers
1895461TTATTTGATACTCGAAATTATTTGATAATCGAAAGTATTTGATACTCGAAADesign primers
1900580ATC-ATC-CTC-ATC-CTC-ATC-CTC-ATC-CTC-ATC-CTC-ATC-CTC-ATC-CTC-ATC-CTC-ATC-CTC-ATCDesign primers
1993019CCATTGGCATATTGA-ACATTGGCATATTGA-ACATTGGCATATTGADesign primers
2043796CT-CT-AT-CT-AT-CT-AT-CT-AT-CT-AT-CT-AT-CT-AT-CT-AT-CTDesign primers
2051158TAGTTACTGATATGGGC-TAATTACTGATATGGGC-TAATTACTGATATGGGC-TADesign primers
2064198GTTTATGATTAATGCTTGTTTATGATTAATACTTGTTCATGATTAATGCTTDesign primers
2179681TGTGTGA-TGTGTGA-TGTGTGA-TGTGTGDesign primers
2210549CTGTAGTTCATTACTGCA-CTGTAGTTCATTACTGCA-TTGTAGTTCATTACTGCA-CTGDesign primers
2220682CTG-CTG-GTG-CTG-GTG-CTG-GTG-CTG-GTG-CTG-GTG-CTGDesign primers
2262443GGCTTGTTAAATCTATC-GGTTTGTTAAATCTATC-GGTTTGTTAAATCTATC-GGDesign primers
2346424TCACCTG-TCACCTG-TCACCTG-TCACCTG-TCACCTDesign primers
2494164CCAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAADesign primers
2503454TGATTGAT-TAGTTGAT-TAGTTGAT-TAGTTGAT-TAGTTGAT-TAGTTGAT-TAGTTGAT-TAGTTGAT-TAGTTGAT-TAGTTGAT-TAGTTGAT-TAGTTGAT-TDesign primers
2578127ATTACTTG-ATTACTTG-ATTACTTG-ATDesign primers
2578276CTTTCTAT-CTTTCTAT-CTTTCTAT-CTTTCTATDesign primers
2588982GATGTT-GATGTT-GATGTT-GATGTT-GATGTT-GATDesign primers
2698876ACAGCAGGC-ACATCAGGC-ACATCAGGC-ACATCAGGC-ACATCAGGC-ACATCAGGC-ACADesign primers
2786127AGAAAAACA-AGAAAAACA-AGAAAAACA-AGAAAADesign primers
2798384CTGATAGTTATGGTTAATAGCTGAGAGTCATGGTTAATAGCTAATAGTTATGGTTAATAGCTDesign primers
2847538TGTAGCAAGCTGACTGTAGCACGCTGACTGTAGCAAGGTGACDesign primers
3040598CTGACTATC-CCGACTATC-CCGACTATC-CCGACTATC-CCGACTATC-CCGACTATC-CCGACTATC-CCGACTATC-CDesign primers
3066051ACTTATGG-ACTTATGG-ACTTATGGDesign primers
3067581AATACAGGA-AATACAGGA-AATACAGGA-AATACAGGA-AATACAGGA-AATDesign primers
3073231ATGTTTATGGGTGGATGTTTATGGATGGATGTTTATGGATGGATGDesign primers
3095668GCAATTAA-CCAATTAA-CCAATTAA-CCAATTAA-CCAATTAA-CCAATTAADesign primers
3174001TTTTGGCTTCAATCCAACTATTTTTACTTCAATCCAACTATTTTTGCTTCAATCCAACTCTDesign primers
3191472AGTCAGTAGAACATGGGTTTAGTCAGTAGAATATGGCTTTAGTCAGCAGAACATGGGATTADesign primers
3195410CTCTTTTG-CTCTTTTG-CTCTTTTG-CTCTTTTG-CTCTDesign primers
3203031GCCTATTTATCAAAACAAGTCTATTTATCAAAACAAGCCTATTTATCAATACAAGCCTATTDesign primers
3223455TAACAATCTCATTAC-AAACAATCTCATTAC-AAACAATCTCATTACDesign primers
3297986CATTAC-TATTAC-TATTAC-TATTAC-TATTAC-TATTAC-TATTAC-TATTACDesign primers
3303876CTCATTG-TTCATTG-TTCATTG-TTCATTG-TTCATTG-TTCATTGDesign primers
3303919TCATTGC-TCATTGC-TCATTGC-TCATTGC-TCATTGC-TCATTGC-TCATTGC-TCATTGDesign primers
3312466TTTATTA-ACTATTA-ACTATTA-ACTATTA-ACTATTA-ACTATTA-ACTATTA-ACTATTA-ACTATTA-ACTATTA-ACTATTA-ACTATTA-ACTATTA-ACTATTA-ACTATTA-ACTATTA-ACTATTA-ACTATTA-ACTATTA-ACTATTA-ACTATTADesign primers
3346554ATTTATCTATCTATGTT-GTTTATCTATCTATGTT-GTTTATCTATCTATGTTDesign primers
3475068TACTTATTTGAAACACTTATTTGAAATACTTATTTGAAADesign primers
3495700TGCTTTATATCTCGCTGATACTTTATATCTCGCTGATGCTTTATATCTCACTGATDesign primers
3515478ATATCAAG-ATATCAAG-ATATCAAG-ATATCAADesign primers
3562729CTTTATGGTTCAACTT-GTTTATGGTTCAACTT-GTTTATGGTTCAACTTDesign primers
3574778TGACACTCAA-TGTCACTCAA-TGTCACTCAA-TGDesign primers
3646621ATCCAACAACTATTAATGCAATTCCAACAGCTATTAATGCAATTCCAACAGCTATTAATGCAADesign primers
3654250AGCTAATTG-AGCTAATTG-AGCTAATTG-AGCDesign primers
3699827AAAAATGATT-GAAAATGATT-GAAAATGATT-GAAAATGATTDesign primers
3700272TCACTTTCC-TCACTTTCC-TCACTTTCC-TCACTTDesign primers
3722018AAAGACTATAGCCCTGAT-AAAGACTATAGCCCTGAT-AAAAACTATAGCCCTGAT-AADesign primers
3747103ATAACCCATGAGATCGATAGCCCATGAGATCGATAACCTATGAGATCGATADesign primers
3787241CCGAACAAG-CCGAACAAG-CCGAACAAG-CCDesign primers
3787280CACAAGCCA-CACAAGCCA-CACAAGCCA-CACAAGCCA-CACAAGCCDesign primers
3787334CACAAACCGCACAAACCACACAAACCACACAAACCACACAAACCGCACAAGCCACACAAATCGCACAAACCACACAADesign primers
3820268ATTATTAA-ATTATTAA-ATTATTAA-ATTATTAA-ATTATDesign primers
3840532ATTTGTGGTGACGACATTATTTGTGGTGACGACATCATTTGGGGTGACGACATTDesign primers
3849992GTTTCAATTTATCAACATAGGTTTTAACTTATCAACATAGGTTTTAATTTATCAACATAGDesign primers
3856539AAAACGCTA-TAAACGCTA-TAAACGCTA-TAAACGCTA-TAAACGCTA-TAAACGCTADesign primers
4039144TTCCGAAAAACAATCAG-TTCCGAAAAACAATCAG-TTCCGAAAAATAATCAG-TTDesign primers
4067058ATTGTTGTTACTCCCGTTTGGATTGTTGTTATCCCCGTTTGGATTGTTGTTATTCCCGTTTGGATDesign primers
4163604TCAA-TCAA-CCAA-TCAA-CCAA-TCAA-CCAA-TCAA-CCAA-TCAA-CCAA-TCAADesign primers
4193057ACCCAAC-ACCCAAC-ACCCAAC-ACCCAAC-ACCCAAC-ADesign primers
4397556GCGACAATATCA-ACGACAATATCA-ACGACAATATCA-ACGACAATATCA-ACGACAATATCADesign primers
4406103AACACC-AACACC-AACACC-AACACC-AACACC-AADesign primers
4472172GAAAAACAG-GAAAAACAG-GAAAAACAG-GAAAAACADesign primers
4489707AAGCAGTT-AAGCAGTT-AAGCAGTT-ADesign primers
4503522GAGTAGTCGTCAAGAGTGCGAGTAGTTGTCAAGAGTGCGAGTAGTTGTCAAGAGTGCGADesign primers
4537609CTATTGGATAAAATCGCTATTAGATAAAATCGCTATTGGATAAAATCTDesign primers
4557391TGGTGGTT-TGGTGGTT-TGGTGGTT-TGDesign primers

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