Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Yersinia pestis KIM

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
3764	TGTTGTTGAAATTTA-CGTTGTTGAAATTGA-ATTTGTTGAAATTGA-ATTTGTTGAAATTGA	Design primers
36396	AAACTGTCTTATTCAAATAACATCTCTTTTATTCAAATAACATCTGTTTTATTCAAATAAA	Design primers
43075	TTAAAGTTGAGCCGTGTTTAACGTTGGGTCGTGTTTAACGTTGAGCTGTGCTTAA	Design primers
51263	ATTCTTAATCAAAAATAATAGCTCTTCATCAAAAGTAATAGCTCTTCATCAAAAATAATA	Design primers
57658	GGTGCCCGACGAAACCGGTGCTCTATGAAACCGGTGCTCTATGAAACCG	Design primers
61940	CAAACAAGTCTGTAAATAAAAGCAAGTATGTAAATAGAAACAAGCATGTAAATA	Design primers
62795	TAGTATTTGTAGTGAATGACAGTATTTGTAGTGGATGACAGTATTTGCAGTGGATGATA	Design primers
153368	GTAAATGACTACCACAGTAAATGACTACTACAGTAAATTACCATCACAGTAAA	Design primers
174589	GTGATGCA-GAGATGCA-GAGATGCA-GAGATGCA-GTG	Design primers
174631	AAAAGGTAATAAAGGGTAATAGAAGATAATA	Design primers
178443	AGTGTATTCATCAAACAATGCATTCATCAAACAATGCATTTATCAAACA	Design primers
201112	TCTGGTTCT-TCCGGTTCT-TCCGGTTCT-TCTG	Design primers
219860	TTACTCATACTAAAAACA-ATACTCATACTAAAAACA-ATACTCAGGCTAAAAACA	Design primers
255256	AGAAGTATCCACCATTACAAGTATCTACCATTACAAACATCCACCATTA	Design primers
260825	TTGGAGATGATTGGTTTGAAGATGATGGCTTTGAAGATGATGGCTTTG	Design primers
300433	TTATTTCATAACGCTGATCGCTATTTCACAACGCGGGTCGTTATTTCATCATGCCGACCGTTATT	Design primers
301536	GCCTCAACCCCATTTACATTCTCAACCCCACTTACATCCTCAACCACACTTACA	Design primers
305838	AATCATC-CCTCATC-CCTCATC-CCTCATC-CCTCATC-CCTCATC	Design primers
320288	AGTGAAAACGTTAACTGCAGTAAAAATATTAACTGCAGTGAAAAGGTTAACTGCAGTGAAAAGGTTAATTGTAG	Design primers
326615	CTGGTGGT-TTGGTGGT-TTGGTGGT-TTGGTGGT	Design primers
373596	ATTTGCAACACGCGATCTATTTGCAACACACAATTTATTTACGACACGCGATCTATTTGC	Design primers
373657	ACAGACAATTTATTTACGACAGACAATTTATTTGCGACACACAATTTATTTGTGACACACAATCTATTTGCGACAGACA	Design primers
404001	GTATAGTTGAGTCACTATATAGTTGAATCATTATATAGATGAATCACT	Design primers
410617	GTCTCAGGAGATGGTATGTATCAGGAAATTGTATGTATCAGGAGATTGCATGTATCAGGAGAACGTATG	Design primers
456089	AAGTGAATAACGCTGGATAAGTGAATAACGCTGAATAAGTTGATAACGCCGGATAA	Design primers
458101	TAATCAAACATTAGCC-TAATCAAACATTAGCC-TATTCAAACATTGACC-TAATCAAACAT	Design primers
458924	ATTTTGCTGAGCACGTTGATTTTGCTGAGCACGCTGATTTTGCTGGGTACATTG	Design primers
464813	TTCTGAAGT-TGAAGAAGT-TGAAGAAGT-TGAAGAAGT-TGAAGAAGT-TGAAGAAGT-TGAAGAAGT-TGAAGAAGT-TGAAGAAGT-TGAAGAAGT-T	Design primers
477329	GTGATGATTAACGATTAACGATTAACGATTAACGATTAACGATTAACGATTAACGATTAACTA	Design primers
590862	CG-AC-GT-CG-GT-AA-AG-GG-CG-GG-CG-GC-GT-CG-GT-AA-AG-GA-CG-GG-CG-AC-GT-AA-AT-AA-AG-AG-CG-GG-CG	Design primers
595744	AGCAGCAGCAACAGGAGCAGCAAC	Design primers
642533	ATAACCTCTGCTATTTATAACCGCTGATATTTATAATCTCTGGTATCT	Design primers
648322	TCTATTC-TGCTTTT-TGCTTTT-TGCTTTT-TGCTTTT-TGCTTTT-TGCTTTT-TGCTTTT-TGCTTTT-T	Design primers
661436	CTAGTTTTAAACGTCAGATTAGTCTTAGACGTCAGATTAGTTTTAGATGTCAGATTAGTTTTAGACGTCAGA	Design primers
686934	TGCTGGCTTTGGTAATGGTGGCTTTGGTAACGATAGCTTTGGTAA	Design primers
698500	TAAACCAAAACCCAAACCTAAACC	Design primers
705968	AGTCATGTTGTTCTAAGTCATGGAGCTCTAAGTCATGGCGATCTAA	Design primers
725784	TTAACGTTACAGCAAAACATTAGCGTTATAGCAAAACATTAACGATACAGCAGAGCATT	Design primers
744097	GGACGATCAGCCACTGCATCAGGGCAATCAACCACTGCGTCAGGACGATCAGCTACTGCGTCAGG	Design primers
758293	CTGACGGTG-GTGACGGTG-GTGACGGTG	Design primers
815020	TAATGAAAGGTATTTATTAATGGAGCGTATTTATTAACGTAACGTATTTATTAA	Design primers
815656	TTTGGGTAATACTGTTTTGGGTAATACTGCTTTGGGTCATATTCT	Design primers
825897	TTGAATTTCAATATGAATTTAAATT	Design primers
842170	TATCGCAGTTAAAGACATGTCTCGGTTAAAGACATATCACAGTTAAAAATA	Design primers
845534	TATTTACC-TGCTCAAC-TGCTCAAC-TGCTCAAC-TGCTCAAC-TGCTCAAC-TGCTCAAC-TGCTCAAC-TGCTCAAC-TGCTCAAC-TGCTCAAC-TGCTCAAC-TGCTCAAC-TGCTCAAC-TGCTCAAC-TGCTCAAC-TGCTCAAC-TGCTCAAC-T	Design primers
852001	GTTACCCTAAGAATTGGTTATCCTAAGAATTAGTTGCCCGAATAATTGGT	Design primers
891347	TCCAGATTGTTCAGTAAGGCCAGCTTGTTCAGCAAGGTCAGATCGTTCAGTAAG	Design primers
898459	AAAGTACCGCTAAAACT-AAAGCATCGTTAAAACT-AAAGCATCGTTAAAACT-AAAGCATCGTTAAAACT-AAAG	Design primers
904733	TTTCTGCTG-TAGATGCTG-TAGATGCTG-TAGATGCTG-TAGATGCTG-TAGATGCTG-T	Design primers
914547	GGCTGGCATGAATGATAA-GGCCAGCATGAATGATAA-GGCCAGCATGAATGGTAA-GGCT	Design primers
917456	TCCAGCACAATCTACAGCTCCAACACAATTTATAGCTCCAACACAATCTACAACTCCAGCA	Design primers
929091	GGCAGTCTCTCAATAACGACAGTCTCTGAATAATGACGGTCTCTAAATAACG	Design primers
934548	TTTTACTC-CCTGACTC-CCTGACTC-CCTGACTC-CCTGACTC-CCTGACTC-CCTGACTC-CCTGACTC	Design primers
937475	CTGAATCATACAAAGTTATCTAAATCATACAAAGTTATCCGAATCATAGAAAATTATCT	Design primers
944294	ATTAACGGGTGATGACATTAATAGATGATGACATTAATAGGTGATTACAT	Design primers
954265	TTCAGGTGACAATGTTTGGTTAGGTAACAATGTTTGGTTAGGTGACAATGTTTGGTCAGATGAAAATGTTTG	Design primers
972549	TTATCAAGACATTGTTTATAAAGATACTGTTTATCAAGACAGTGTTTATCAA	Design primers
981747	GTGAAGTGAGCTGAACTGAGGTGAACTGAA	Design primers
991675	GTAGTTGAAAGTAATCTAGTTGAAAGTAACCCAGTTGAAAGCAATTTAGCTGAAAGTAATG	Design primers
1035944	TTCATACATTAGCCTTTATCATATGTTAGCCTTTATCATACATTAGCCTTT	Design primers
1044436	AAGCACGGTCCTATCAAATAACGGACCTATCAAATAGCGGTCCTATCAAATAACGGTCCTATCAAA	Design primers
1053630	TGTCTATCAGGTGGATAGTGCTCATCAGGTGGATAGTGCGCATCAGGTGGATAGT	Design primers
1054987	CGTCTCCTT-CGTCCCCTT-CGTCCCCTT-CGTC	Design primers
1071489	CCACTGGC-TCACTGGC-TCACTGGC-TCACTGGC	Design primers
1103260	GCTGTTGCTCTTGCTGATGTTGTTGC	Design primers
1119976	ACTCAGTAGCTATACCGTAA-ATTCAGTAGCTATACCGTAA-ATTCAATGGCTATACCGTGA-ATTCAATAGCTATACCGTAA-A	Design primers
1169003	TGGACGTTACTGAAACTGAAAGTTACTGCAACTGGACATTAATGAAACT	Design primers
1191663	AGCTACTGTTGTTAAAA-AGCTACTGTTGTTAAAA-GGCTAATGTTGCTAAAA-AGCTAATATTGTTAAAG-AGTTAATGTTGTTAGAA-A	Design primers
1191750	CCACTGTTATTAGAGAACCACTCTTGTTAGCGAACAACGGTTGTTAGAGAACCA	Design primers
1217041	TCATTTG-CTATTTG-CTATTTG-CTATTTG-CTATTTG-CTATTTG	Design primers
1244244	ATTGCTTGGTAATCAAGGTTATCGCGTGGTAATCGAGGTTACTGTGTGGTAATCGAGGTTATTGC	Design primers
1247239	GTACTATTTATCCGTGGAGAGTACTCATTATCAATGGAGAGTACTCATTATCAGTGGATAGTACTA	Design primers
1271155	AATATAAACGGTGAATGCGTTTAATATAAACGATAAGTGCATTTAATATAAGCGATGAAAGCGTTCAAT	Design primers
1292726	CCTTTAATACCTCAGT-CATCTAATACCTCAAT-CATCTAATACCTCAAT-CATCTAATACCTCAAT-CATCTAATACCTCAGT-C	Design primers
1312313	ATCAACGACT-ATCACCAACT-ATCACCAACT-ATCACCGACT-ATCACCAACT-A	Design primers
1314679	ACTGTTTTATACACTGAACTGCTTTATAAACTGAACGGTTTTATAGACCGAACTGTTTTAT	Design primers
1316243	TTAAAAATTATTTGAAAATTGTTTAAAAATTAT	Design primers
1321581	TCAACGTGACCTGTCTTAACGTGACTTGTCTTAACGTAACCTATCT	Design primers
1321693	TCTGCTTCAACTAATCTGTTTCAACTAACCTGTTTCAACTAATCTGCTTCAAC	Design primers
1334314	TCAATTTTTATAACTATCAATGTTTGTAACCATCAATATTTGTAACTATCAATGTTTTTAACTAT	Design primers
1356606	GGAGCAATAAGTCGCGGAACAATAAATCACGGAACAATAAGTATCGGA	Design primers
1373181	TTACCGTGAGCAGGAAAGTTACCGTAAACAGAAAAGTTACCGTAAACAGAAAAGTT	Design primers
1376364	TTTTACTGGATCAAAACATTTGCTAGATCAAAACATTGACTAGATCAAAACATTGACTAGATCAAAAC	Design primers
1378358	TTATTAAATTTCCATAAGTTGTTAAATTGCGATAAGTTATTAAATTGCTATAAGTTATTAAATTGTCATAAA	Design primers
1379635	TATCACC-TGTCACC-TGTCACC-TGTCACC-TGTCACC-TACCACC-TACCACC-TACCACC-TACCACC-TA	Design primers
1385115	ATGGTAAAAACGGGTTAATGGTAAAAACAGGTTGATGCTAAAAATAGGTTAAT	Design primers
1408498	TATTTTCAGTATCAATATTGTTGGTATCAATATTGTCGGCATCAAT	Design primers
1416849	CCAAAGTATCTGATGACCAAGTACCTGATGATCAAGTATCTGATG	Design primers
1420054	GAAAATAGCTATATGACGAAAATAGCTAGGTGACAAAAATAGCTAGGTGAC	Design primers
1457562	TCTTGCATCAATGAACGTTTGCATCAATGAACGCTTGCCTCGATGAAC	Design primers
1461638	CTAAGCCAGCTGAAAGTAAACCCGCTGAAACCAAACCAGCAGAAAC	Design primers
1475222	CGCAAAGTTGATTGC-CGTAGAATTGATTGC-CGCAAAGTTGATTGT-CGCAAAGTTGATTGT-CGCAAAGTTGATTGT-CGCAAAGTTGATTGT-CG	Design primers
1483310	TAGCCGATGAACAGTTAATAGCAGGTGAACAGCTAATAGCAGGTCAACAGTTAATAGC	Design primers
1505216	CGTGTTTTATATTGTGCCGATAGTGTTTTATATTGTGCTAATAGAGTTTTATATTGCGCCAAT	Design primers
1511779	ATCACTGC-GTCACTGC-GTCACTGC	Design primers
1556183	TCATTTGAACAGCTTATTTGAACAACTTATTTGAACAGAT	Design primers
1561192	CAAAATCAGTCGTT-ACAAATCAGTCGTT-ACAAATCAGTCGTT	Design primers
1651354	GCATTACTAACAATTAGTTTTGCTAACAATTAGCATTACTAACGATACGCAT	Design primers
1658077	TTTTTGAGCCGTTTGTTTATGAACCATTTGTTTATGAACAGTTTGTTT	Design primers
1663766	AATTTATAAATGATTGTAGTTATAAATGATGGTAGTTATAAATGATTC	Design primers
1672560	GCCAAAATGCAGCTCTATC-ACCAAAATGCAGCTCTATC-ACTAAAATGCAACTCTATC-ACCAAAATGCAACTCTATC-ACCAAAATGCAACTCTATC-GCCA	Design primers
1691478	TTTTTCA-GTTTTCA-GTTTTCA-GTTTTCA	Design primers
1694911	GCTCAGATACTATATTGGCCTCAAGTACTATATTGGCCTCAGATACTATATTGG	Design primers
1698147	GTACAGGTTGCAACTGTGCCGATTGCAACTGTAACGGCTGCAACTGT	Design primers
1710429	CAGTAATAGCGGTAATAGCAGTAATGGC	Design primers
1726687	GACATCGCCACCGGATCCAACAGTGCCACCGGATCCGACATTGCCACCGGATCCGACATTGCCACCAGATCC	Design primers
1726776	CAACGTTACCGCCGGAAACCACGGCACCGCCGGAAACCACGGCACCGCCGGAAAC	Design primers
1726832	ACGGCACCGCCAGAAACAACGGCACCGCCAGAGACAACGGCACCGCCGGAAACCACGGCACCGCCGGAAACAACGGCACCGCCAGAGACAACGGCACCGCCAGAGACAACGGCACCGCCAGAAACAACGGCACCGCCGGAAACAACGGCACCGCCGGAAACAACGGCACCGCCGGAAACAACGGCACCGCCGGAAACCACGGCACCGCCAGAGACAACGGCACCGCCAGAGACAACGGCACCGCCGGAACCGACG	Design primers
1729123	GAAGAGATTGTATTTGAGATAGATTGTATTTGAAATAGATTGTGTTTG	Design primers
1729172	AATAGATTATGTTTGA-AATAGATTATGTTTGA-AATAGATTATGTTTGA-AATAGATTATGTTTGA	Design primers
1737330	ATGCATCAAGTACCGTTGCATCAAGCACCATTACATCAAGCACCG	Design primers
1749004	GTGGTGACCTGTTTT-GTGATGACCTGTTTT-GTGACGACCCGTTTT-GTG	Design primers
1750129	GCGCTTTC-GCTTATTG-GCTTATTG-GCTTATTG-GCTTATTG-GCTTATTG-GCTTATTG-GCTTATTG-GCTTATTG	Design primers
1750202	CTTATTGA-CTTATTGA-CTTATTGA-C	Design primers
1764736	ATGAAGACATTTATCACCGAAATTAAGACAGTCATCAGCGAAATTAAGACAGTCATCACCGAAAT	Design primers
1776410	TCATTGACCTCATTGCCCTCATTGACA	Design primers
1792647	TGATAAAAGTCGATAAAATTTAACAAAAGTT	Design primers
1793310	GTATTTCT-CTATTTCT-CTATTTCT	Design primers
1818802	CATCATC-TGTCATC-TGTCATC-TGTCATC-TGTCATC-TGTCATC	Design primers
1847326	CGCAAGGGGTAAGTGATCGTAAGGGATAAGTGAACGAAAGGAATAAGTGATCG	Design primers
1863884	ATGAATTTGATACAGTGATAAATTTGATACAGTAATTAAGTTGATGCAGTGA	Design primers
1893590	CGATTTTAAAGCCCTAAGATTTTAAAACGCTAGGATTTTAAAGTCCTA	Design primers
1895459	TTTTATTTGATACTCGAAATTATTTGATAATCGAAAGTATTTGATACTCGA	Design primers
1900575	TTTTAATCATCCTCATCCTCATCCTCATCCTCATCCTCATCCTCATCCTCATCCTCATCCTCATCCTCATCC	Design primers
1932455	GCGTTATCACGACTGGTGTTATCACGGTTGGTGTTATCGCGGCTGG	Design primers
1972499	AATAAATACGTACTGTTATAAACACATACTGTTATAAACACGTACTGC	Design primers
1976788	GTTAAACAGCGGGTAAACAGTGGATGAACAGCG	Design primers
1984184	ATATTGAGGGCTGAAT-GTATTGAGGAATGAAT-GTATTGAGGAATGAAT-GTATTGAAGGCTGAAT	Design primers
1992998	CATTGTCCATTGGCA-TATTGTCCATTGGCA-TATTGAACATTGGCA-TATTGAACATTGGCA	Design primers
1996223	TGCTGCAGTTGAAGGTCATGTTGTAGTTGAAGGTTATGTTGCAGTTGAGGGGCAT	Design primers
2010662	AGCGGCAGTAACACCATCATCGGCAGTAACACAATCATCGGCAATAACACAATCATCGGCAATAACACCATCA	Design primers
2017710	TTATGGCGAAGTAACATTAATATGGAGAAGTAACATTAATATGGCAAAATAACATTA	Design primers
2040913	CTTTGTTGTTATCAGTATTTATTGTTATCCGTATTTATTGTTATCAGT	Design primers
2043793	TT-AC-TC-TA-TC-TA-TC-TA-TC-TA-TC-TA-TC-TA-TC-TA-TC-TA-TC-TA-TC-TA-TC-TA-T	Design primers
2051125	AATTACTGGTATGGGCT-AGTTACTGGTATGGAAT-AGTTACTGATATGGGCT-AATTACTGATATGGGCT-AATTACTGATATGGGCT-AATTACTGGTATGGGCT-AGTTACTGATATGGGCT-A	Design primers
2053150	GTAACAGTAACGATAACAGTATCA	Design primers
2064195	ATCGTTTATGATTAATGCTTGTTTATGATTAATACTTGTTCATGATTAATG	Design primers
2073748	TAATTATCACTATTTATCACTATTTATCTCT	Design primers
2088863	CGCTATTTACCTTTGT-CACTATTTACCTTTGT-CACTATCTACATTTGT-C	Design primers
2089869	CAAATAATAGACTTTGCAGTAACTAATAGATTTTGCAGTAACTAATAGACTTTACAG	Design primers
2123522	GTCGGCGATGTAATAACTAATCGACGGTGTAATAACTAATCGGCGATGTAATAACTA	Design primers
2126103	TTAATTGGCCCATAACAATTAATTGGCTCATAACACTTAATTGGTTTATAACAA	Design primers
2131377	TGGGTAGTTATAAAGT-TGGGTAGTTATAAAGT-TGAGTGGTTATAAGGT-T	Design primers
2152079	TGATAGCCAGCAATTGATAGCAAACAATTGATAGCCAACCAT	Design primers
2154660	ACAAAGTTTTTAATAACAAATAGTTTTTAATAACAAACAGTTTTTACTAAC	Design primers
2168951	AGTGTATTGATAGTTGTATTGATAATTGTATTGATG	Design primers
2169485	CATGGTATTTATCACAATGGTATTTATCGCAATAGCATTTATCACAATGGTATTCAGCAC	Design primers
2179680	GTGTGTG-ATGTGTG-ATGTGTG-ATGTGTG-G	Design primers
2191614	TCTACTGGTACGATAGACCTACGGGTACGCTAGACCTACTGGCACGCTAGA	Design primers
2210546	GGCCTGTAGTTCATTACT-GCACTGTAGTTCATTACT-GCATTGTAGTTCATTACT-G	Design primers
2220681	ACT-GCT-GGT-GCT-GGT-GCT-GGT-GCT-GGT-GCT-GGT-GCT	Design primers
2233580	TTATTTTGGAATAGTTAATTTATTTTGGGATGGTTGATGCATTTTGGAATAGTTGAT	Design primers
2262433	TTAATCTATTGGCTTGT-TAAATCTATCGGTTTGT-TAAATCTATCGGTTTGT-TAAATCTATCGGTTTGT-T	Design primers
2291854	AGCCAGGTAGAATTTAATCCGGATAGAATTTAAACCAGATAGAATTTAA	Design primers
2302768	AACAAGTTCATTTTAACCAAAACAAGTCCACCTTAACTAAAACAAGCCCACTTTAACCAC	Design primers
2314115	CTGATTGTATAAAACTGACTGCATAAAACTGATCATATAAAAC	Design primers
2325552	CAAATTAGTACACAGTTAAATTAATATACAGTTAAATTAGTACACGGT	Design primers
2339208	CGATAGTTGCAGAACCGATGGCTGTAGAACCGATAGCTGCAGAGCC	Design primers
2341781	ACCACAACGACAATCGTCATCACAACCACAATCGTTATCACAACGACAACCCTCA	Design primers
2346422	TATCACC-TGTCACC-TGTCACC-TGTCACC-TGTCACC-TATCACC-TATCACC	Design primers
2349612	GCCGATGTTTATTAAGACTATGTTTATTGAGCCTATATTTATTAA	Design primers
2400031	CATCCTCGACATAAGCATAATCAACATAAGTATCATCAACATAAGCA	Design primers
2459280	TATTTGATAAATTCAA-TATTTGATAAATTCAA-TGTTTGATAAGTTCGA-TA	Design primers
2494160	CAGG-CCAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CA	Design primers
2494505	ATCTAGTTGACACAAGAATATGTAACTGACACAAGAATATATAGTTGATACAAGAATAT	Design primers
2503451	TACTGATT-GATTAGTT-GATTAGTT-GATTAGTT-GATTAGTT-GATTAGTT-GATTAGTT-GATTAGTT-GATTAGTT-GATTAGTT-GATTAGTT-GATTAGTT	Design primers
2520680	GGCTAAGCGGCTAATCGGCTAAGC	Design primers
2570946	ATACAC-CTACAC-CTACAC-CTACAC-A	Design primers
2571893	CATCTAGTTGTGAACCATCTATTTATGAGCCATCTATTTATGAAC	Design primers
2578126	TATTACTT-GATTACTT-GATTACTT	Design primers
2578275	CCTTTCTA-TCTTTCTA-TCTTTCTA-TCTTTCTA	Design primers
2588979	GAAGAT-GTTGAT-GTTGAT-GTTGAT-GTTGAT-GTTGAT	Design primers
2592637	AATAAATACAATGATCTAATAAATATAATTTTCTAATAAATACAATACTCGAA	Design primers
2596929	TTTTAGATAATTAACCGATTTTAAGATAATTAACCGGTTTTAAGATAATTAATTGATTT	Design primers
2620429	AAATAAGATAAAATGCAATATAATA	Design primers
2624997	GGTAGTGAATGATGTAGTGGTAGTGAATGATGTAGCGGCAGTGAATTATTTAGTGG	Design primers
2698874	AAACAGCAG-GCACATCAG-GCACATCAG-GCACATCAG-GCACATCAG-GCACATCAG-GCACATCAG-GCACATCAG	Design primers
2739073	ATGTGTCAAGGTAATTGTGTGTCAAGGTAATCGTATGCCAAGGTAATTGTGTGCCAGGGTAATTAT	Design primers
2743557	TGCCAGTAAACAGTCAATTTCTAGTAAACAATCAATTCCCAGTAAACAATCATT	Design primers
2745755	TGGGTTAATAAGTCACCATGAGTTAATAAGTCACCCTGGGTTAATAAGCGACAA	Design primers
2748733	GACCTCGACAACATTGGCCTCAACAACGTTGGCCTCGACAACAAC	Design primers
2786126	CAGAAAAAC-AAGAAAAAC-AAGAAAAAC	Design primers
2798379	AATTCCTGATAGTTATGGTTAATAGCTGAGAGTCATGGTTAATAGCTAATAGTTATGGTTAAT	Design primers
2814844	GTTGATACAACAACT-GTTGATACAACAACT-GTTACTAAAACAACT	Design primers
2847537	TTGTAGCAAGCTGACTGTAGCACGCTGACTGTAGCAAGGTGA	Design primers
2880428	AAAACACGGTTGTCGAAAACACTATTGCCGAAAACACTGTTATCG	Design primers
2913347	CTATCTCTTTCCACTACCTATTTCCACTACCTGTTTCCAC	Design primers
2925066	TTGGGATAACCAGAAAATACTTGGATAACTAGAAAATACTTGGATAACTAGAAAATA	Design primers
2932447	CTGAAATAGTGATATACACGAAATAGTGATATGCCTGAAATAGTGATATAT	Design primers
2963038	TAAATAGATGAATAGATAAATAGT	Design primers
3040596	ATCTGACTA-TCCCGACTA-TCCCGACTA-TCCCGACTA-TCCCGACTA-TCCCGACTA-TCCCGACTA-TCCCGACTA	Design primers
3066050	TACTTATG-GACTTATG-GACTTATG	Design primers
3067580	CAATACAGG-AAATACAGG-AAATACAGG-AAATACAGG-AAATACAGG	Design primers
3073229	GCATGTTTATGGGTGGATGTTTATGGATGGATGTTTATGGATG	Design primers
3095666	CGGCAATT-AACCAATT-AACCAATT-AACCAATT-AACCAATT-AACCAATT	Design primers
3101099	TGTCGATTGGCCATATGTTGATTGCCCGTATGTTGATTGACCATATGT	Design primers
3115526	TGCTCTTCATAAGCCAGTGCTATTCATAAGTCAGTGCTATTCATAAATCAGT	Design primers
3168691	ACGGATAGA-ACAGATAGA-ACAGATAGA-AC	Design primers
3173998	ATTTTTTGGCTTCAATCCAACTATTTTTACTTCAATCCAACTATTTTTGCTTCAATCCAA	Design primers
3180908	TAAACCTGGCGGGAATTGAACCTGACGGGAATTGAACCTAACGGGAATT	Design primers
3191470	CCAGTCAGTAGAACATGGGTTTAGTCAGTAGAATATGGCTTTAGTCAGCAGAACATGGGA	Design primers
3195409	TCTCTTTT-GCTCTTTT-GCTCTTTT-GCTCTTTT	Design primers
3203026	CACAGGCCTATTTATCAAAACAAGTCTATTTATCAAAACAAGCCTATTTATCAA	Design primers
3208620	GCGTTTAGTTCTGTT-GATATTAGTTCTGTT-GATATTAGTTCTGTT-G	Design primers
3223452	CAATAACAATCTCATTACAAACAATCTCATTACAAACAATCTCAT	Design primers
3248887	TACATTTATCACCTCCG-TACTTTTATCACCTCCG-TACTGTTATCACTTCCG-TACATTGATCACCTCCG-TAC	Design primers
3255324	TTAATTTTTTTAAAATTTTTTTAATCTTTA	Design primers
3256407	TACAATTGATCTGTACACAATCGATCTGTACACAATACATCTGTA	Design primers
3297985	TCATTA-CTATTA-CTATTA-CTATTA-CTATTA-CTATTA-CTATTA-CTATTA	Design primers
3301142	TACAGCTATATTTACAATTATATTTACAGCTACATTTACAACTGTATTTA	Design primers
3301217	TGATGGCACCATAAAACGGATGGCGCCATGAAACGAATAGCACCATAAAAC	Design primers
3303875	ACTCATT-GTTCATT-GTTCATT-GTTCATT-GTTCATT-GTTCATT	Design primers
3303918	TTCATTG-CTCATTG-CTCATTG-CTCATTG-CTCATTG-CTCATTG-CTCATTG-CTCATTG-TTCA	Design primers
3312464	CCTTTAT-TAACTAT-TAACTAT-TAACTAT-TAACTAT-TAACTAT-TAACTAT-TAACTAT-TAACTAT-TAACTAT-TAACTAT-TAACTAT-TAACTAT-TAACTAT-TAACTAT-TAACTAT-TAACTAT-TAACTAT-TAACTAT-TAACTAT-TAACTAT	Design primers
3346550	TGCGATTTATCTATCTA-TGTTGTTTATCTATCTA-TGTTGTTTATCTATCTA-TG	Design primers
3346604	TGTTTAGCTATCTATGTTGTTTAGCTATCTATGCCATTTAGCTATCTATGA	Design primers
3354751	TGCCTTTATAAATGATGACGTTATGAATGATGACGTTATGAATGATG	Design primers
3402903	TGTATATAAATTGTATGTTAATTGTACATAAAAT	Design primers
3475064	GAAGTACTTATTTGAAACACTTATTTGAAATACTTATTTGAA	Design primers
3489431	AAAGAGGT-AAAGAGGT-AAAGAGAT-AAA	Design primers
3495694	CGCAGGTGCTTTATATCTCGCTGATACTTTATATCTCGCTGATGCTTTATATCTC	Design primers
3504134	AGTCATTTGGGGCGATACACTGTTATTTGGGTCAATACACTGTCATTTCGGTCAATACACAG	Design primers
3515477	TATATCAA-GATATCAA-GATATCAA-GATATCAA	Design primers
3562727	AACTTTATGGTTCAAC-TTGTTTATGGTTCAAC-TTGTTTATGGTTCAAC	Design primers
3574777	GTGACACTCAATGTCACTCAATGTCACTCA	Design primers
3577666	CAATAACCTTCATAAACAATAATTTTTATAAACAATAACGTTTATAAACAA	Design primers
3601292	GGCTTTGTCTTTGGGTTTGGCTGT	Design primers
3629251	GTGTTTCAATACCATCAATGCTTCAATGCCATCAATGATTCAATACCATCAGTGATTCAATGCCATCA	Design primers
3638219	ATACTGTTACCCTTAAATATTGTTACCTTTAAATACTGTTGTCTTTAAATA	Design primers
3646619	CGATCCAACAACTATTAATGCAATTCCAACAGCTATTAATGCAATTCCAACAGCTATTAATGC	Design primers
3654249	AAGCTAATT-GAGCTAATT-GAGCTAATT	Design primers
3665363	ATAGTTGTGATAGCTACGCTAATAATTGTGAAAGCTAGGTTAATAGTTGTGACAGCTAGGCTAA	Design primers
3681472	ATTAGTGGTTAATAAGTA-AATAGTGGTTAATAAGTA-AATAGTGGTTAATAGGCA-A	Design primers
3682879	TAAACATGTTCATGCTATCCACGTTCATGCGATCCATGTTCATGC	Design primers
3699826	AAAAAATGAT-TGAAAATGAT-TGAAAATGAT-TGAAAATGAT	Design primers
3700271	ATCACTTTC-CTCACTTTC-CTCACTTTC	Design primers
3722016	CCAAAGACTATAGCCCTG-ATAAAGACTATAGCCCTG-ATAAAAACTATAGCCCTG	Design primers
3747100	CCAATAACCCATGAGATCGATAGCCCATGAGATCGATAACCTATGAGA	Design primers
3773935	GCTAGATCAATAAAGTCAATTACATCAATAAAGTCAGCCACATCAATAAAATCAG	Design primers
3775963	CCAGTTACATCAATAAAATCAGCCACATCAATAAAATCAGTTGCATCAATAGAACCAGTT	Design primers
3781129	CACTATTATCAGGAATACGAGTATCAGGAATACGAATATCAGGAA	Design primers
3787234	ATACAAACCGAACAAGCCGAACAAGCCGAACAAGCCACACAAATCGCACAAGCCA	Design primers
3787290	ACAAGCCAC-ACAAGCCAC-ACAAGCCAC-ACAAGCCGC-ACAAGCCGC-ACAA	Design primers
3787340	CCGCACAAACCACACAAACCACACAAACCACACAAACCGCACAAGCCACACAAATCGCACAAACC	Design primers
3787416	ACAAACCACACAAGCCACACCAACCACACCAACCACACAAGCCACACCAACCACACA	Design primers
3793018	CCAGTTTATTTGGGTTGTCCAGTTTATTTGGATTGTTCAGTCTATTTGGATTGT	Design primers
3799164	TT-TT-AT-TT-TT-TA-CT-TT-TT-AT-TT-TT	Design primers
3820267	GATTATTA-AATTATTA-AATTATTA-AATTATTA	Design primers
3840527	ACTTTATTTGTGGTGACG-ACATTATTTGTGGTGACG-ACATCATTTGGGGTGACG-AC	Design primers
3840584	TTTGAGCTGATGACATTTGGGTTGATAACATTTGAGCGGATGATCT	Design primers
3842682	TCTGTAAACTTAGGTCTATAAACCTAGGTCTATAAACTTAGG	Design primers
3847134	CTGCGCCTGGCTGCGGCTGACGGCGGCTGGC	Design primers
3849988	CTATGTTTCAATTTATCAACATAGGTTTTAACTTATCAACATAGGTTTTAATTTATCAAC	Design primers
3856537	CCAAAACGC-TATAAACGC-TATAAACGC-TATAAACGC-TATAAACGC-TATAAACGC	Design primers
3889230	GTTTACTCGCAAAATACTGTTTACTTGAGAAATACTGTTTACTTGCAAAATACGGCTTACTTGCAAAATACG	Design primers
3918910	TAATCGCTAATAGCTAATCTCTAATCGCT	Design primers
3922026	GACGAAGATGAAGACGAGGATGAAGACGACGACGCAGA	Design primers
3988844	AACCTGTTTTTCTTCTACCCGTTTTTCTTTTACTGGTTTTTCTTC	Design primers
4038996	GCATT-TCATT-GAATT-GAATT-GAATT-G	Design primers
4039100	AAACACTCTATTTTGAAAAACAATCTATTTCGATAAACAATCTATTCCGAAAAACA	Design primers
4039157	TCAGTTCCGAAAAACAATCAGTTCCGAAAAATAATCAGTTTCGATAAACAG	Design primers
4058624	AAAGATTGTTCTAAAAAAAGATTGTTCTACCCCAACATTGTTCTACAA	Design primers
4067055	TATATTGTTGTTACTCCCGTTTGGATTGTTGTTATCCCCGTTTGGATTGTTGTTATTCCCGTTT	Design primers
4068770	CTTTTTAGTCTGTTGAAACTTTTTAGTCTATTGACGCTTTCCAGTCTGTTGACACTT	Design primers
4098116	AATAAAATTAAAAATATAATTAAAA	Design primers
4140628	AAAGACAATAGGTATCGATCAAAACAATAGGTATCGATCAAAACAATAGATATCGAT	Design primers
4163601	CGTT-CAAT-CAAC-CAAT-CAAC-CAAT-CAAC-CAAT-CAAC-CAAT-CAAC-CAAT-CAAC-CAAT-CAAC-CAAT-C	Design primers
4174208	AAATAACTATGTTGATAA-AAATAACTATGTTGATAA-AAGTAACCATGTTGACAA-AAATAACTATGCGAATAA-A	Design primers
4186250	TTAATTAATCAAGCTAGTTAATTAATCAAAATAGTTAATGAATGAAGATAGT	Design primers
4189109	GTTGATCTTTCTTATCTGTTTATCTTTCTTATCTGTTTATCTTTCTTGCCTG	Design primers
4193055	AAACCCA-ACACCCA-ACACCCA-ACACCCA-ACACCCA-A	Design primers
4224008	TTTATCATGAATAGCTTTATCACGAATCGCTTTAGCATGGATCGCT	Design primers
4269174	GTTCATAACCGCACTAGTTCATAACAACATTAGCCCATAACCGCATTAGTTC	Design primers
4312912	TGTTGCAAACGGATAATGTTGCAAGTGGGTAATGTTGCAAACGGATAATGTTGCAAACAGGTAA	Design primers
4316366	CATTTATATAGTAACTATTTACATAATAACCATTTATATAACAGCCATTTATATAACGAC	Design primers
4342012	ATTTATTGATCAGACTGAGCTTATTGATCAGACTGAACTTATTTATCAGAATGAA	Design primers
4343619	GTAATTGTTGAAACTG-ATAATTGTTGGAGCTG-GTAATTGTTGGAGCTG-GTAATCGTTGAAACTG-GTAATTGTT	Design primers
4364654	AGTGTTTATAAGTAAATGTTTATAGGTAAGTGTTTATAAAAAA	Design primers
4373850	GATAAGCGGTTTTATCAATAGGTCAGTGGTTTTATCAATAGGTCAGTGGTTTTATAAATA	Design primers
4385625	TAGAAGGCCATCATGCAGAAGGCCATGATATCGACGGTCATCATGT	Design primers
4386912	ATCAAACAGTGCTTCATCAAATAGCACTTCATCAAACAGTGTCTTATCAAA	Design primers
4386964	AATGTCTCATCAAGTAATATCTCACCAAATAATGCCTCATCCAGTAATG	Design primers
4395159	CCTTAACTGCATAGCTAA-CCTTAACTGCATAGCTAA-CCTTAACTACACCGCTAA-CCTTAAC	Design primers
4397553	CTTGCGACAATATCAACGACAATATCAACGACAATATCAACGACAATATCAACGACAATATCAACGACAATAC	Design primers
4406103	AACACC-AACACC-AACACC-AACACC-AACACC-AA	Design primers
4407232	CGATGTTGTTACAAGTAAACTGATATTGTTGCAAGTAAACTGATATTGTTACAAAAAAACC	Design primers
4408725	CATGTCTGTGGGTAACATGTTTGTGAATAACATATCTGTGGATAA	Design primers
4432546	GACCAT-GAACAT-GAACAT-GAGCAT-G	Design primers
4472170	ACGAAAAAC-AGGAAAAAC-AGGAAAAAC-AGGAAAAAC-A	Design primers
4476188	CTTGGGAAACTGCTGTATTTGGAAACTGCTGCCTTGGGAAATGACTGTCTTGGAAAACTATTGT	Design primers
4489706	AAAGCAGT-TAAGCAGT-TAAGCAGT	Design primers
4501937	TTTATTTGGTTGATCGTTTACTGAGTTGATCGTTTACTGGGTTGACCG	Design primers
4503517	TGTGTGAGTAGTCGTCAAGAGTGCGAGTAGTTGTCAAGAGTGCGAGTAGTTGTCAAG	Design primers
4537607	ATCTATTGGATAAAATCGCTATTAGATAAAATCGCTATTGGATAAAAT	Design primers
4544184	CATGCACTGTTTATCTAATATGTATTGTTTATCTAACATGTATTCTTTATCTAA	Design primers
4557390	ATGGTGGT-TTGGTGGT-TTGGTGGT	Design primers
4595190	TTCAGCTTCTGCTTTAGCTTCATC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

3764

TGTTGTTGAAATTTA-CGTTGTTGAAATTGA-ATTTGTTGAAATTGA-ATTTGTTGAAATTGA