Microsatellites /Tandem Repeats database

Genome: Streptococcus agalactiae NEM316

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
29847GCTACAACTACAGCTACAGCTACTDesign primers
37560AGTTGAAATTGAAGTAGATGTTGADesign primers
49676AAAAATCAAAATCAAAATAAAAAADesign primers
115635ACG-AAG-AAG-ACG-ATG-AAG-AGG-AAG-AAG-AGG-AAG-AAG-ADesign primers
158888TTATAAAAATGTAAAAAAATGTAAAAAAATDesign primers
230214CTGATAAAAA-CCAATAAAAA-CCAATAAAAA-CCAATAAAAA-CDesign primers
268548TAAAGAAAGATAAAAAATGACAAAAAAAGADesign primers
505916ATAGCATTAATTTATAGTATTATTTTATAGTATTATTTTATDesign primers
801849TAAGGAAATAAAGAAATAAGCAAADesign primers
1108679ATTGGTATTGCTTTTGGTCTTGGTDesign primers
1243710AACAATACTTTA-AACAATACTTTA-AACTATACTTAA-ADesign primers
1342471ACA-ATA-ATA-ATA-ACA-ATA-AAA-ATADesign primers
1564666TTTTTTTATTTTTCTTATTTTTTTTDesign primers
1589447GTGGAGGCGCTCATACTTGCTGACGTGGATGCACTGGTACTTGCTGACGTGGATGCGCTCATACTTGCTGATGTGGATGCACTGGTACTTGCTGACGTGGAAGCGCTAGTACTTGTTGACGTDesign primers
1589615GTTGAGGCGCTCATACTTGCACTTGTGGAAGCGCTAGTACTTGCACTTGTTGAGGCGCTCATACTTGCTGAGGTDesign primers
1589794TGTGGAAGCACT-GGTTGAAGCACT-GGTTGAAGCACT-GGTTGAAGCACTDesign primers
1589861GCTGACGTGGATGCGCTCATACTTGCTGATGTGGATGCACTGGTACTTGCTGACGTGGAAGCGCTAGTACTTGDesign primers
1589942GAGGCACTGGTACTGGCACTTGTTGAAGCACTAGTACTTGCACTGGTTGAGGCGCTCATACTTGCACTTGTTGAAGCGCTAGTACTTGCACTTGTTGAGGCDesign primers
1590057AGGTGGAAGCACTGGTTGAAGCACTGGTTGAAGCACDesign primers
1755606ATCTTCTTCATTTTCTTCAGCTTCTTCDesign primers
1772119TATTTTATATGTTATATTATATATDesign primers
1953258AATCCAAAATAATCTAAAAAAATCAAAACTDesign primers
1995303ATACAAAACAAAATAAAACATTACAAGACADesign primers
2090025TGCTGGTTTGGCCTCTGGTTTAGCTTCTAGCTTAGCCTCTGGTTTAGCTTCTGACTTAGCCTCTGGTTTAGCTTCTGGCTTAGCCTCTGGTTTAACDesign primers
2090128TTAGCTTCTGGCTTAACGTCTGGCTTAGCTTCTGGTTTGGCCTCTGGCTTAGCTTCTGGCTTAGCTTCTGGCTTAGCTTCTGGCTTAGCTTCTGGTTTDesign primers
2149638TATATCATATTTTATAATATTATATDesign primers
2157846TCAAAAATAATCAAAATTCATCAAAAATCTTCAAAAAAACTDesign primers
2205879TTTGTCAATGTTTGTCACTCTTTGTAAACGTDesign primers

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