Microsatellites /Tandem Repeats database

Genome: Pirellula sp.

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
278779AAAGCTGAAGCGAAG-CAAGCTGAAGCGAAG-CAAGCTGAAGCGAAGDesign primers
327757TTGAAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTDesign primers
327823TCGCCTC-TCGCCTC-TCGCCTC-TCGCCTC-TCGCCTC-TCGCCTC-TCGCCTC-TCGCCTC-TCGCCTC-TCGCCTDesign primers
817350CCTGTGGC-CCTGTGGC-CCTGTGGC-CCTGTGGCDesign primers
1172273TCGGACGGGGCTGAA-TCGGACGGGACTGAA-TCGGACGGGACTGAA-TCGGACGGGACTGAA-TCGGACGGGACTGAA-TCGGACGGGACTGAA-TCGGACGGGDesign primers
1182377CGAGCA-CGAGCA-CGAGCA-CGAGCA-CGAGCDesign primers
1493159GGCATGGACATGGGCATGGATATGGGCATGGACATGGGCATGGATATGDesign primers
2803301ACGAGTC-CTGAGTC-CTGAGTC-CTGAGTC-CTGAGTC-CTGAGTC-CTGAGTC-CTGAGTC-CTGAGTC-CTGAGTC-CTGAGTC-CTGAGTC-CTGAGTC-CTGAGTC-CTGAGTCDesign primers
2803407TGAGTCCC-TGAGTCCC-TGAGTCCC-TGAGTCCC-TGAGTCCC-TGDesign primers
2803450GCCCCTGT-GCCCCTGT-GCCCCTGT-GCCCCTGDesign primers
3220823ACCGCCGCCCATGCCGCCACCCAT-GCCGCCGCCCATGCCGCCACCCAT-GCCGCCGCCCATGCCGCCGCCCATDesign primers
3477582GATGGGCGGCGGCATGGGAGGCATGGGCGGTGGCATGGGAGGAATGGGCGGCGGCATGGGTGGDesign primers
3477700GGCATGGGCGGCGGCATGGGAGGCATGGGTGGCGGCATGGGAGGGATGGGGGGCGGCATGGGAGGCDesign primers
3730690AACCCTGCATTCCCGATCCCTGCATTCCCGATCCCTGCATTCCCGDesign primers
4291702TTTCTAG-CTTCTAG-CTTCTAG-CTTCTAG-CTTCTAG-CTTCTAGDesign primers
4291745TACTGGC-TACTGGC-TACTGGC-TACTGGC-TACTGGC-TACTGGC-TACTGGC-TACTGGC-TACTGGC-TACTGGC-TACTGGC-TACTGGC-TACTGGC-TACTGGC-TACTGDesign primers
4291849GGCTCTGT-GGCTCTGT-GGCTCTGT-GGCTCTDesign primers
4371756GTCGCAAAC-GTCGCAAAC-GTCGCAAACDesign primers
4610754CTGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCC-GAGTCCDesign primers
4610926ACGAGTCCGAGCACGAGTCCGAGTCCGAGTCCGAGCACGAGDesign primers
4610968ACGAGC-ACGAGC-ACGAGC-ACGAGC-ACGAGC-ADesign primers
4611000GAGCAC-GAGCAC-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCADesign primers
4630240CACGAGCAATCGAGCAATCGAGCAATCGAGCAATCGAGCAATCGAGCAATCGAGCAATCGAGCAATCGAGCACDesign primers
4630314AGCACG-AGCACG-AGCACG-AGCACG-AGDesign primers
4704619CCGCCGGGAGGTTTGCCG-CCACCGGGAGGTTTGCCG-CCACCGGGAGGTTTGCCG-CCDesign primers
4790612TAGCCAC-TAGCCAC-TAGCCAC-TAGCDesign primers
4790638CCTAGCT-CCTAGCT-CCTAGCT-CCTAGCT-CCTAGCT-CCTDesign primers
4790677GCTCCTC-GCTCCTC-GCTCCTA-GCTCCTA-GCTCCTA-GCTCCTA-GCTCCTC-GCTCCTC-GCTCCTC-GCTCCTC-GCTCCTC-GCTCCTC-GCTCCTC-GCTCCTC-GCTCCTC-GCTCCTC-GCTCCTC-GCDesign primers
4790799ACTCGCA-ACTCGCA-ACTCGCA-ACTCGCA-ACTCGCA-ACTCGCA-ACTCGCA-ACTCGCA-ACTCGCA-ACTCGCA-ACTCDesign primers
4862178CCCTGTGC-CCCTGTGC-CCCTGTGC-CCCTDesign primers
5043093CCTAGCT-CCTAGCT-CCTAGCT-CCTAGCT-CDesign primers
5807245GAGCTGAC-GAGCTGAC-GAGCTGAC-GAGCTGAC-GAGCTGAC-GAGCDesign primers
5807296GACGAG-CACGAG-CACGAG-CACGAG-CACGAG-CACGAGDesign primers
5807334CGAGAG-CGAGAG-CGAGAG-CGAGAGDesign primers
5807987AAAGAACT-GACGAACT-GACGAACT-GACGAACT-GACGAACT-GACGAACT-GACGAACT-GACGAACT-GACGAACT-GACGAACT-GACGAACT-GACGAACT-GACGAACT-GACGAACT-GACGAACT-GACGAACT-GACGAACT-GACGAACT-GACGAACT-GACGAACT-GACGAACTDesign primers
5808161CTGACGAG-CTGACGAG-CTGACGAG-CDesign primers
5808208GAAGCTA-GAAGCTA-GAAGCTA-GAAGCTA-GAAGCTA-GAAGCTA-GAAGCTA-GAAGCTA-GAAGCTA-GAAGCTDesign primers
5855478TCCGCGCTCTTCTGCGCTCTTCCGCGCTTTDesign primers
6089377AGCAAATGA-AGCAAATGA-AGCAAATGA-AGCAAATGADesign primers
6380825CGCCAGGCGGAA-CACAAGGCGGAA-CACAAGGCGGAA-CACAAGGCGGAA-CACAAGGCGGAA-CACAAGGCGGAA-CDesign primers
6726222GCGAGC-ACGAGC-ACGAGC-ACGAGC-ACGAGC-ACGAGC-ACGAGC-ACGAGCDesign primers
6726271AGAAGCT-AGAAGCT-AGAAGCT-AGAAGCT-AGAAGCT-AGAAGCT-AGAAGCT-AGAAGCT-AGAAGCT-AGAAGCT-AGDesign primers
6875933GGCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGC-TTCTAGCDesign primers
6876165TCTAGC-TCGTGC-TCGTGC-TCGTGC-TCGTGC-TCGTGC-TCGTGC-TCGTGC-TCGTGC-TCGTGC-TCGTGC-TCGTGC-TCGTGC-TCGTGC-TCGTGC-TCGTGC-TCDesign primers
6919597GATGAC-GAGCAC-GAGCAC-GAGCAC-GAGCAC-GAGCAC-GAGCAC-GAGCAC-GAGCAC-GAGCAC-GAGCAC-GAGCAC-GAGCAC-GAGCAC-GAGCAC-GAGCAC-GAGCAC-GAGCAC-GAGCAC-GAGCAC-GADesign primers
6919729GAGCTAG-AAGCTAG-AAGCTAG-AAGCTAG-AAGCTAG-AAGCTAGDesign primers
6972686ATGTATAAGGTTGGCT-GTGTATAAGGTTGGCT-GTGTATAAGGTTGGCTDesign primers
6987178GAGCTTCTAGCTTCTAGCTTCTAGCTTCTAGCTTCTAGCTTCTAGCTTCTAGCTTCGDesign primers
6987236GCTTCGT-GCTTCGT-GCTTCGT-GCTTCGT-GCTTCGT-GCTTCGT-GCTTCGT-GCTTCGT-GCTTCGT-GCTTCGT-GCTTCGT-GCTTCGT-GCTTCGT-GCTTCGT-GCTTCGT-GCTTCGT-GCTTCGT-GCTTCGT-GCTTCGT-GCTTCGT-GCTTCGT-GCTTCGT-GCTDesign primers
6987394GTGCTC-GTGCTC-GTGCTC-GTGCTC-GTGCTC-GTGCTC-GTDesign primers

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