Microsatellites /Tandem Repeats database

Genome: Legionella pneumophila str. Paris

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
29337GATTTGGATTTTGTTTTGGTTTTGDesign primers
71343CCAATAAAAATGGCAATAAAAAAGGCAATAAAAATADesign primers
80300CTGTTTGTGTTTCTGGTTCTTTTTDesign primers
159250AGTAAGCATGATTAATCATGAGTGGGCATGDesign primers
579996CTTTAGCTGTAGCTATAGCATTAGDesign primers
824764ATGGGCGGCATGGGCGGAATGGGTGGCATGGGCGGAATGDesign primers
1271822TCTTCGTTTTCTTCTTTTTCTTCATTTTCTDesign primers
1286989TGAAAAACGAAAAATTAAAAATGADesign primers
1333036TT-AT-TT-TA-TC-TT-TT-TT-TC-TT-TT-TT-TDesign primers
1389193ATTCTCAGT-TTTCTCAGT-TTTCTCAGTDesign primers
1389221TTCTCAGCT-TTTTCAGCT-TTTTCAGCT-TTDesign primers
1400718TGGAACCAGAGGTTCAGA-CTAAACCAGAGGTTCAGA-CTAAACCAGAGGTTCAGADesign primers
1400773TAAACCAGAAGTTCAGAC-TAAACCAGAAGTTCAGAC-TAAACCAGAAGTTCAGAC-TAAACCAGAGGTTCAGAC-TAAACCAGAGGTTCAGAC-TAAACCAGAGGTTCAGAC-TAAACCAGAAGTTCAGAC-TAAACCAGAAGTTCAGAC-TAAACCAGAAGTTCAGAC-TAAACCAGAAGTTCAGGC-TAAACCAGAAGTTCAGGC-TAAACCAGAAGTTCAGGC-TGAGCCAGAAGTTCAGGC-TGAGCCAGAAGTTCAGGC-TDesign primers
1430400AATTAATTTATATTAAATTGAATTTDesign primers
1452166TGCCAAAGCCGCCAAAGCTGCCAAAGCTDesign primers
1497079GTATTTTA-TTATTTTA-TTATTTTADesign primers
1608793AGCCAAACTTGAAGAAGAGCAACGAATCAAGCTTGAAGAAGAGCAACGAATCAAGCTTGAGGAAGAGCAACGAATCAAGCTTGAGGAAGAGCAACGAATCAAGCTTGAGGAAGAGCAACGAATCAAACTTGAGGAAGAGCAACGAATCAAGCTTGAGGAAGAGCAACGAATCAAGCTTGAGGAAGAGCAACGADesign primers
1989292GTTGTTGTTGCTGCTGTTGTTGATDesign primers
2214028AAATGTTAAGGAATTGTTAAGAGATTGTTAAGGAATTGTTAAGAADesign primers
2269616CACCAAATCCTCCAAATCCACCAAAACCACCDesign primers
2297369TACAGACCTTACTACAGGCCCTACTACAGACCTTATTACDesign primers
2413525TTTTTCTTTTTTCTTTCTCTTTTTTTTCTTTTCTDesign primers
2903638TT-TT-TT-AT-TT-TT-CA-TT-TT-TT-CT-TT-TDesign primers
2986766TCTTTGTTTCTTTTTTTCTTTGGTTDesign primers
3158980ATCAATTC-ATCAATTC-ATCAATCCDesign primers
3190105TTTACTTG-ATTACTTG-ATTACTTGDesign primers
3190130TTACTTA-TTACTTA-TTACTTA-TTACTTA-TTACTTA-TTACTTA-TTACTTA-TTACTTA-TTACTTA-TTACTTA-TDesign primers
3211420TTTTTCTTCTTCTTTTACTGTTTCDesign primers
3222834AAATCAAAATGATAATCAAAATCTADesign primers
3316173TACTAGAACTGGGACTAGAACTAGAACTAGAGCTGGGACTAGAGCTGGDesign primers

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