Microsatellites /Tandem Repeats database

Genome: Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
203CAC-CAC-CAC-CAT-TAC-CAC-CAT-CAC-CADesign primers
68420TTT-TAA-TTA-ATT-TAA-TTA-TTT-TTA-TTADesign primers
88189ATTTTTTAA-GTTTTTTAA-GTTTTTTAADesign primers
199993GGCGAGATGGATCATGGCAACATGGATCACAGCGGGATGAATCATGGCGDesign primers
249056CGGCGGTAACGGCGGCAACGGCGGTCADesign primers
693749TGGCGCCGCTGGCGCTGCTGGCGCTGCDesign primers
768551GCGCTGAAC-TCGCTGAAC-TCGCTGAAC-GDesign primers
896159GATGATGGTGATGATGGTGATGTTDesign primers
982380GTTGCAGTC-GATGCAGTC-GATGCAGTC-GDesign primers
1249269TTATGCTGGATTATCCTGGCGTATGCGGGADesign primers
1382443GCATAGCAGG-TAATAGCAGG-TAATAGCAGG-TAATAGCAGGDesign primers
1836917GCTCCGGCACCGGCTCCGGCTCCGGDesign primers
2029120TTCGCGCCAGTTCGCGGCATCGCGCGCCAGTDesign primers
2124303ATATAAAAAACATATAATTAACATTTAAGAAACADesign primers
2201221GTCATT-GTACTG-GTACTG-GTACTG-GTACTG-GTACTG-GTACTG-GTACTG-GTACTG-GTDesign primers
2515556TGCGTTGGACAATCGTTGGACATCCGTTGGACADesign primers
2564556CATACATCT-CCTACATCT-CCTACATCT-CCTACATCT-CDesign primers
2693741GTTTTATCTTGTTTTATGTGGTTTGATTTTDesign primers
2861185ACCATC-GCCATC-GCCATC-GCCATCDesign primers
2863205TATGGGTTTATGTGAGTTTATAAGGGTTTTDesign primers
2953009GTTGTGATGTTGTGTTGTTGTGTTDesign primers
3002174ATCACG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ADesign primers
3255794CGCGCGACCGGCGCGACCCGCACGACCDesign primers
3277959TCGCTT-TCGCTT-TCTCTT-CCGCTTDesign primers
3278726TCGCCGCCGTCGCCGCCATCACCGCCGTCDesign primers
3513562ATGCAGACGCAGATGCAAACGCAGDesign primers
3606393CACCAG-CACCAG-CGCCAG-CAGCAGDesign primers
3804482GCAGCGCCA-GCAGCGCCA-GCGGCGCCADesign primers
3964493CGCGCCGTTA-ACCGCCGTTA-ACCGCCGTTADesign primers
4028277TCATTATAATTAACATTATCAATATCADesign primers
4113134CGCGGTAAATCTCGATAAATGGCGGTAAAACGDesign primers
4466612ATGTTTGCCAGCGTTTGCCATTGTTTGCCADesign primers

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