Microsatellites /Tandem Repeats database

Genome: Pelagibacter ubique HTCC1062

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
27021TTTAATTTTATTTTTAAATTTAATDesign primers
27719AATAAATAAAAAATAAAAATAAAATTAATAAAADesign primers
122737TTTTTTTTTCTTTCTTTTATTGTTTDesign primers
158563TTTGATAATTTTTTATATTTTTTAATTATTDesign primers
162050TT-TT-TA-TT-TT-TT-TT-AT-TT-TT-TT-TA-TDesign primers
166167TGCTGGTGGAATGTCTGGTGGAATGCCTGGTGGAATDesign primers
166204GGCGGCATGGGTGGCATGGGCGGAATGDesign primers
166390AAAGAAA-AAAGAAA-AAATAAA-AAAGAGADesign primers
177711TTTTTTGTTTTTTCTTATTTGTTTTDesign primers
194346ATCTTATTTATTTTATTTATTTTATTTDesign primers
258308CTGCTGCTGGTGCTGCTTCTGCTTDesign primers
258356CTGCTGCTGGTGCTGCTTCTGCTTDesign primers
258404CTGCTGCTGGTGCTGCTTCTGCTTDesign primers
258452CTGCTGCTGGTGCTGCTTCTGCTTDesign primers
285363TT-AT-TT-TT-AT-TT-AA-TA-TT-AT-TT-TT-TT-AT-ATDesign primers
338017TTAAAACTAAAATTAATATTAATADesign primers
345564AAATATAAAAAAAATTAAAAAAAAAAATTAAAADesign primers
367762ATTAAATTTAAAATTAACATTAATDesign primers
377470TATTTTATTATATATTTTTTTAATTDesign primers
379792TACTAAATTATTAAATTACGAAATDesign primers
410555GAAAAAAGC-TAAAAAAGC-TAAAAAAGCDesign primers
429704AAATATTGAAAATATCGAAAAAATTGADesign primers
470055AAAGATAAAAAGAAAAAAAGATTADesign primers
517928AATAA-AATAA-AAAAA-AATAA-AAAAADesign primers
524931TTTTTTAAAAGTTTTAAAAAATTTTTTAAADesign primers
546066AA-AA-AA-AA-AA-AA-AT-GA-AA-AA-AA-AT-AA-AADesign primers
577391AAAAAGAAATAGAAAAAAATAAAGDesign primers
628419TAACTAGTGTAAGCTAGTGTGAGCTAGTGTDesign primers
639053TAAAAAAAAAAATAAAACTAAAATDesign primers
702279ATTTTAGAAAATTTTATTAAATTTTTTAAADesign primers
746644AAAGTTAAAGGTAAAGATAAAGTTDesign primers
764337AT-AT-TT-TT-AT-AT-CT-TT-AT-TT-TT-TTDesign primers
794855CTATTTTT-GTATTTTT-GTATTTTTDesign primers
825372TTT-TTT-TAA-TTT-TTT-TTA-CAA-TTT-TTT-TGT-TAT-TTTDesign primers
922360CTGGTT-CTGGTT-CTGTTT-CTGGTGDesign primers
957608ATTCTTTTATTTTTTTATTCATTTDesign primers
974308AATTTTTTTAATTTTCTTAATTTTTTTDesign primers
983649TTAAAAAAGATTACAAAAAATTAAAAAATTDesign primers
1017977TTTAATTTTATTTTTAATTATAATDesign primers
1021432AAATAAAACAAAAAAAAATGAAATTDesign primers
1050986GA-AA-CA-AA-AA-AG-AA-AA-AA-AA-AA-CA-AA-AA-AA-AA-ADesign primers
1052304TATTTAATTTTATTATCTTTCATTTDesign primers
1052640TTTTTATTTTTTATTTTATTTTTTADesign primers
1060027TATTTTTTTTTATTTTCTTTTTTTTDesign primers
1069922TTTTATTTAATTTTCTTTTTTTGTADesign primers
1082911CTG-CTG-CTG-CTG-CTG-GTG-CTG-CTGDesign primers
1170634ACCCATTCCCACACATTACCACCCATTGCGDesign primers
1208645TTAGAAAAATTAGTAAAATTAAAAAAADesign primers
1282510TCA-GCA-GCA-GCA-ACA-GCA-GCA-GCADesign primers

Please help us improve this resource by reporting problems, suggestions etc.