Microsatellites /Tandem Repeats database

Genome: Staphylococcus aureus RF122

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
50638AA-AA-AA-TA-AA-AA-AA-GA-AA-TA-GA-AA-ADesign primers
251613TTAGTATTATTATTTGTATTATTADesign primers
284951AAAGAAATGAAAAAAGAAGATAAGADesign primers
393559TTGATAAAATTGAAAAAATTAATAAAADesign primers
418612GA-TA-AA-AA-TA-AA-TA-TA-AA-GA-AA-AADesign primers
426373AACAATAATAAAAAATAATGAAACATAATADesign primers
575882ACAGCGACTCAGATTCAG-ACAGTGATTCAGACTCAG-ATAGCGACTCAGACTCAG-ATAGCGACTCAGATTCAG-ACAGCGATTCAGACTCAGDesign primers
576000CGATTCAGACTCAGATAG-CGATTCAGACTCAGATAG-TGAATCAGACTCAGACAG-TGATTCAGATTCAGATAG-CGATTCAGACTCAGACAG-CGATTCAGACTCAGATAGDesign primers
576109GATTCCGATTCAGACAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCDesign primers
576174AGATAGCGATTCAGATTCAGATAGTGACTCAGACTCAGACAGTGACTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCCGATTCAGATAGTGATTCAGATTCDesign primers
576286AGTGAATCAGACTCAGATAGCGATTCAGATTCAGATAGTGACTCAGACTCAGATAGCGATTCAGACTCAGATDesign primers
576359GCGACTCAGATTCAGACAGTGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGACTCAGACTCAGACAGTGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATGDesign primers
579901TCAGACTCAGATAGCGATTCAGACTCAGATAGCGAC-TCAGATTCAGACAGTGATTCAGATTCAGATAGCGAC-TCAGACTCAGACAGCGATTCAGATTCAGATAGCGAC-TCAGACTCAGACAGCGATTCAGACTCAGACAGTGAT-TCAGACTCAGACAGCGATTCAGATTCAGATAGCGAC-TCAGATTCAGACAGTGATTCAGATTCAGATAGCGAC-TCAGACTCAGACAGCGATTCAGATTCAGATAGCGAC-TCAGACTCAGACAGCGATTCAGACTCAGACAGCGAT-TCAGATTCAGACAGTGATDesign primers
629059AA-TA-AA-AA-TA-AC-TA-TA-AA-CA-TA-AADesign primers
670128AAAATTAATATTAAAAATAAAAATDesign primers
692711GATTAGAATTAGGATTAGGATTATDesign primers
747397AAATTTTTTTAAATTTGTTCAAGTTTTTCTDesign primers
818551AGCTGCAGATGCACCTGCAGCTGGDesign primers
819646ATCAGATAGTGATTCAGA-TTCAGCGAGTGATTCAGA-TTCAGCGAGTGATTCAGA-TTCAGCGAGTGATTCAGA-TTCAGCGAGTGATTCAGA-TTCAGCGAGTGATTCAGA-TTCAGCGAGTGATTCAGADesign primers
819965TCAGATTCGGATAGCGATTCAGATTCAGCAAGCGATTCAGATTCCGATAGTGATTCAGATTCAGCAAGCGATTCAGATTCCGACAGTGATDesign primers
820061TCGGACAGCGACTCAGACTCAGACAGTGACTCAGATTCCGACAGTGATTCAGACTCAGACAGCGATTCCGACDesign primers
839815AAAAGTATAAAAGTTTAAAAGAATDesign primers
882132TAATAATAATACTAGTAATAATTADesign primers
997683TAGGTGTTGGTGTAGGCGTAGGTTDesign primers
1108916AATTAATTAAATATTAAATAAAAATTAACTATADesign primers
1309799TATTAAAGAATATGAAATAATAGAAAAGAADesign primers
1312185CTGCTTCTTCTTCGGCTTCTTCTTDesign primers
1359494ATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGDesign primers
1664843TTCTTTTTTTATCTTTTCTATTCTTDesign primers
1738497CTTGTG-ATTGTG-ATTGTG-TTTGTGDesign primers
1948408ACAATTTAATAAACTTTAATAGAATTTTATDesign primers
2005797ATATATACAATATACACAATATACACADesign primers
2042051TTTGGATTCGGATTTGGCTTTGGTDesign primers
2042080TGGGTCTGGTTTTGGATCTGGATTTGGCTTTGGTTTDesign primers
2042117TCTGGATCTGGTTTTGGATCTGGADesign primers
2264199AATAAAATACC-AAGCAAATACC-AAGCAAATACC-AAACAAATACCDesign primers
2302869AACTACAAC-AACTACAAC-AATTACAACDesign primers
2307475AACTACAACGACTACAACAACTACGACAACTACATCDesign primers
2322172TAATATATCAATATATTGATATATDesign primers
2334218ATCAGCATTTCTATGATCAGTACTTCTACGGGCAGCGTTTCTATGDesign primers
2361768ACTTTATCACCTTTATCAAGTTTATCADesign primers
2378767TTTGATTATTATTCGCTTGATTATTACTTGATTGGTTATTATTTGDesign primers
2392847TTTAAATTAATTTTATGTAATATAADesign primers
2646883TGTCTGAGTCTGAATCACTATCTGAATCTGACTCACTGTCTGAGTCTGAATCGCDesign primers
2646963TCCGAGTCGCTGTCTGAATCTGACTCACTGTCTGAATCCGAATCGCTGTCTGAADesign primers
2647018CTGAGTCACTATCTGAGTCTGAATCACTATCTGAATCTGAGTCGCTGTCTGAATDesign primers
2647073TGAATCGCTGTCTGAATCTGAGTCACTATCTGAATCTGAGTCGCTATCTGAATCCGAATCGCTGTCTGAGTCCGAATCGCTGTCTGAATCTGAGTCGCTGTCTGAATCTGAGTCGCTGTCTGAATCCGAATCGCTATCTGAGTCCGAATCGCTGTCTGAATCTGACTCACTGTCTGAGTCTAAATCGCTGTCTGAATCTGAGTCACTATCTGAATCAGAATCGCTGTCTGAATCCGAATCGCTGTCTGAATTCGAGTCGCTGTCTGAGTCTGAATCGCTATCTGAGTCDesign primers
2647362GAGTCACTGTCTGAGTCCGAGTTGCTATCTGAGTCCGAGTCACTGTCTGAACCTGAGTCGCTGTCTGAGCCTGAGTCACTGTCCGAATCCDesign primers

Please help us improve this resource by reporting problems, suggestions etc.