Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Magnetospirillum magneticum AMB-1

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
1162	GTGGCGGTGGCCGAGGCGGTGGCG	Design primers
227564	CCATGCCGC-CCATGCCAC-CCATGCCGC-CCATGCCGC-CCATGTCGC	Design primers
295285	GCCGCCGCCGCTCCCGCCGCCGCC	Design primers
366047	GGCTCG-GGTTCG-GGCTCG-GGCTCA-GGCTCG	Design primers
368688	GCGGGGCGCGGCGGCGCGCGGCGGG	Design primers
427971	CTCTTG-CCCTTG-CCCTTG-CCCTTG-CCCTTG	Design primers
487458	CCCGGATGAGGCCGGATGTGGCCGGATGAA	Design primers
506747	GGCGGCGGCGGCGGCGACAGCGGCGGCGGC	Design primers
524281	GGA-GGA-GGT-GGA-GGT-GGA-GGG-GGA-GGG-GGA	Design primers
550172	TGGCCAAGGCCGTGGGCAAGGCGGTGGCCTGGGCCG	Design primers
674494	GGCCAGGGCCGGGACCAGGACCAG	Design primers
694126	ACGGTGTCGGTGTCGGTGACGGCG	Design primers
743396	CCCGCCGGGCGCCGGTCGGGCGCGGGCCGGGCG	Design primers
752554	CCTCGCCTTCGCCCTCGACCTCGGGCTCGCCCTCGG	Design primers
752617	CCTCGGCCTTGGGCTCGGCCTCGC	Design primers
806724	GCCGTT-GCCGTT-CCCGTT-GCCATT-GCCGTT	Design primers
810812	GGCCAGGACCAGGGCCACGGCCAG	Design primers
988113	GAAATCAGCATGGAGGTGACCAGCATGGAGGTGACCAGCATGGAG	Design primers
994230	TCCAGCG-ACCAGCG-ACCAGCG-ACCAGCG	Design primers
1015859	CCGAGTCCCAGTCCGAGCCCGAGA	Design primers
1061180	GGCTCG-GGCTCG-GGTTCG-GGCTCG	Design primers
1065905	CCCGAA-CCCGAA-CCTGAA-CCCGAG-CCGGAA	Design primers
1087103	GCCCAGACCCAGGCCGAGGCCCAA	Design primers
1103020	ACTAGAGAGGATTGGAGAGGACTCGACAGG	Design primers
1153013	TGATCGGCGGCGCGGTCGGCGGCGCGGTCGGCGGCG	Design primers
1153057	GGTTCGGTCGGCGGTGCCGTCGGCGGTTCGGTCGGC	Design primers
1164659	GAAGAAGGACAAGAAAAAGGACAAGAAAAAGGATAA	Design primers
1193321	CGGCCTTGGCCGGAGCCTTGGCCGGGGCCTTGGCCG	Design primers
1193372	CCAGGTCGTCCAGGTCGGGCAGGTCGT	Design primers
1211860	GGAATGCGAATGGCAATGGAAATG	Design primers
1265638	GGCGGTGGCGATGGCGGGGGCGGC	Design primers
1318978	GCTCCGGCCCCGGCTCCGGCTCCG	Design primers
1345806	CAGCAGCACCAGCAGCGGCGGCAG	Design primers
1378381	GGCACCGGCACGGCCACCGGCACC	Design primers
1457226	CCTGGCCCTGGTTCTGGCCGTGGC	Design primers
1457251	GGCTGGCAG-GGCTGGCAG-GGCTGGGAG	Design primers
1466390	CCACAGATGAACACAGATAAACACAGGTGA	Design primers
1480627	GGCCGGGGCAGGGGCCTGGGCCTG	Design primers
1503052	CGGGGCTCCTCGCGGCGGGGTTCGTCGCGCCGGGGTTCTTCACGG	Design primers
1534237	AGGCCCATGCCCTGGCCCAGGCCA	Design primers
1539940	GTCGCC-TTCGCC-TTCGCC-GCCGCC	Design primers
1575010	TGTCCTATC-TGTCCTATC-TGTCCGATC	Design primers
1586755	AGGGCCAGGGGCAGTGCCAGGACC	Design primers
1609139	CGCTGGCCGCTTCTGGCCGCCGCCGGCCTC	Design primers
1617788	CATCACCAGCACCACCACCATCTC	Design primers
1634014	TGTTGTTCTTGTTGTTGTTGTTCT	Design primers
1634668	GGATAAAGGGTTAAAGGGCTAAAG	Design primers
1641797	CGGCGGCGGCGGCGACGGCGACGG	Design primers
1649849	GCTTTCCAGGCATTCCAGGCTTTCCGG	Design primers
1734578	CACGAAGGCGCGAAGGCACGAAGG	Design primers
1743552	CTCCCAAGGCCGAGCCCGCCAAGGTCGAGCCGCCTAAGGCCGAGA	Design primers
1749960	CGG-CGG-CGG-CGG-TGG-CGG-CGG-CGG	Design primers
1881825	AGACACCGGATGACCCCGGATGACACCGGA	Design primers
1917435	CTCGGGCGGCGGCGGCGGCGGCGGCGGCGGCAAGGGCGGCGGGGG	Design primers
1949125	ATCGGCATCGCCATGGGCACCGGC	Design primers
1997496	GATGGGGAAGGGGGTGGGGCTGGG	Design primers
2049947	TCGCCGGTTTCGGCCGCGCCGCCCGCGGTTTCCGCCGCGCCGCCCGCGGTTTCGGCCGCGCCG	Design primers
2106807	TAGGCCTTGGCCGAGGCCTCGGCC	Design primers
2111793	GGCGGCTCCGGCCAAGGCGGATCGGCCCAAGGCGGCTTCGGCCAA	Design primers
2124092	CCTGCTGCGCGCCCGCCTGCGCGCCCTGCTGCGCCG	Design primers
2155185	GGCACCGGCACGGCCACCGGCACC	Design primers
2199668	CCCAGCCCCCAC-CCCAGCCCCCAC-CCCAGCCCTCCC	Design primers
2206633	GCCGCCCAGGCTGCCCAGGCCGCCCAG	Design primers
2242983	GACGATGACGTTGACGAGGGCGAT	Design primers
2311411	CCAGGCCAAGGCCCTGGCCGAGGC	Design primers
2331945	GGCAAG-GGCCAG-GGCCAG-GGCCAG	Design primers
2438497	TGCGCGGCATGAGCGGCATGCGCGGCC	Design primers
2446648	CCACCCGGCCCAACCGGCCCAGCCGGC	Design primers
2449311	CGAGCC-GGAGCC-GGAGCC-CGAGCC	Design primers
2449351	CCCGAG-CCCGAG-CCGGAG-CCCGAG	Design primers
2449477	CCCGAGCCGGAGCCCGAGCCTGAG	Design primers
2459190	CCACAGATGAACACAGATAAGCACAGATGA	Design primers
2459265	GTTTTGATCTGTGTTCATCTGTGTTCATCT	Design primers
2521853	CCTCGGCCA-TCTCGGCCA-TCTCGGCCA	Design primers
2586916	GCCACCACCACCACCACCGCCGCC	Design primers
2712909	TGGGCC-AGGGCC-AGGGCC-TCGGCC	Design primers
2781100	CGAGGCCGTGGCCGACGCCGATGC	Design primers
2824090	GGCCGCCAAGGTCGCCAAGGCCGCCAT	Design primers
2934517	GGC-GCC-GTC-GCC-GCC-GCC-GCC-GCC	Design primers
3005914	CCGGGGCCACCCGGGCCACCGGGACCA	Design primers
3009015	GCGGGCGGCGGCGGTGGCGGCGGCTCGGCCGGCGGC	Design primers
3011840	CGCCGCCGCCGTGGCCGCCGCCGC	Design primers
3025974	CCGCCGCGCCGCGCCGCGCCCCGGC	Design primers
3279340	GAGCCAGAGCCCGAACCAGAGCCT	Design primers
3298319	GCCCCCGCCGCCGCCCCCTCCCCCGGCCCCGCCTCC	Design primers
3324217	GCCCGGCCAGTCCCGGCCAGGACCG	Design primers
3333755	CGG-CGG-CGG-CCG-CGG-CGG-CGG-CGG	Design primers
3338164	CCACCCGGGGCCATTCCGCCGGGAGCCATTCCACCCGGGGCCATG	Design primers
3476644	GCCTGGGCCTGCGCCTCGGCCTCG	Design primers
3480607	GCGGCTTGGGCGGCTCTGGCTTCGGCGGCTCGGGCTTGGGCGGTTCCGGCTTGGGGGGCT	Design primers
3515948	CGGCTATGGCTA-CGGCTATGGCTA-TGGCTACGGCCA	Design primers
3516000	GCCAAGGCGAAGCCCAAGGCCAAC	Design primers
3518481	CGGCTT-CGGCCT-CGGCCT-CCGCTT-CGGCCT	Design primers
3537323	TATGAAGATGAATGTGAATATGAA	Design primers
3543110	CGG-CGG-TGG-CGG-CGG-CGG-CGG-CGG	Design primers
3579639	AGG-AGG-CGG-TGG-CGG-CGG-AGG-AGG-TGG-AGG-TGG-AGG-TGG-CGG-CGG	Design primers
3635465	CGG-CAG-CGG-CGG-CGG-CGG-CGG-CGG	Design primers
3637639	TCGTCCTCGACGACGGAAGGCTCCTCCTCGACGATGGGAGACTCGTCCTCGGCGACCGGCGGC	Design primers
3637703	CGTCCTCGGTGACCGGCGGCT-CGTCCTCGACAACCGGCGGCT-CGTCCTCGACAACCGGCGGCT-CGTCCTCGGCGACCGGCGGCT-CGTCCTCGACGACCAGCGGCT-CGTCCTCGACAACCGGCGGCT-CGTCCTCGACGACCAGCGGCT-CGTCCTCGGCGACCGGCGGCT-CGTCCTCGACGACCAGCGGCT-CGTCCTCGGCGACCGGCGGCT-CGTCCTCGACGACCAGCGGCT-CGTCCTCGACGACCAGCGGCT-CGTCCTCGGCGACCGGCGGCT	Design primers
3699710	CCGCCCCGGCCCCCGCCGCCGCCA	Design primers
3743275	CGGCGGCCGCGGTGGCCGCGGCGGCGG	Design primers
3744105	TCG-GCG-GCG-GCG-GCG-GCG-GCG-GCG	Design primers
3758191	GCCTCGGCCGCGGCCTGGGCCGCG	Design primers
3801898	CCCCCGCCGCGCCGTCCCAGCCCGCGCCGTCCCAGCCCGCGCCGT	Design primers
3820290	CGCCGCCGCCGGCCCCGCCGCCGA	Design primers
3834804	GACCGCCCTGGGGAGCGCCCTTGGGGCCGCCCTGGG	Design primers
3843921	GGCGACGACGCCGGCGGCGGCGGCGGCGGCGGCGGCGGTGACGCCGGCGGCGGC	Design primers
3919863	CCAGGGTCACCAGGGCCAGCAGGGTCA	Design primers
3920431	CACCACCACCGCCACCACCACCAG	Design primers
4004163	TACCAAAC-CACCAAAC-CACCAAAC	Design primers
4017539	GATTGCAGCTCCTCCTTGGAGGTTTCCAGCTCCTCGTTGGTGGATTGCAGTTCCTCGTTGGTGGATTGCAGTTCCTCGTTGGCGGATTTCAGCTCCTCGTTGGAGGATTGCTGCTCCTCGATGGTG	Design primers
4068799	CGTCCTGTGTTCCCGTCGCGTGTTCCTGTCATGTGTTCC	Design primers
4105100	GGCGGGCCTGCTGCGGGCCGGCGGCGGCCATGC	Design primers
4124170	TCAGGG-CCAGGG-CCAGGG-GCAGGG	Design primers
4158648	TGATATTGACATGGATATTGATAT	Design primers
4237933	TCCCATGATTTCCCATGATATCCCATTAAT	Design primers
4239990	CGGCCCCGGCTCCGGCCCCTGCCC	Design primers
4246012	CCCCCACACCCACCCCCAGCCCCA	Design primers
4267851	GCTTCGGCTTCCGCTGCGGCTTCC	Design primers
4337904	GGGCTTCCAGCATGGCGTCCAGCAGGGCTTCCAGAT	Design primers
4354878	GGCGATGGCGAAGCCGATGGCGAT	Design primers
4368925	ATCGCCGGAGCGCCGGACCGCCGG	Design primers
4369295	GGCCGCCGCCGCCGCCGCGGCCGC	Design primers
4405524	TACGCCGCCGACGCCGCCCACGCCGCC	Design primers
4409645	GCTGCTGCTGCTGCCGCTGCTGCA	Design primers
4454335	TCCGACTTGGGCTCCGGCTTAGGCTCCGGCTTGGGC	Design primers
4473170	CTC-CTC-TTC-CTC-TTC-CTC-TTC-CTC	Design primers
4473369	TCGGCGGCGCGGCGGGCGGCCTCTTCCTCGGCGAGGCGAGCGGCCTCTTCCTCGGCGGCGCGGGCGGCCTCT	Design primers
4481516	ACGGCGGCGACGGCGGCCGCGGCGGCG	Design primers
4482621	CGACGACGAAGAGGACGACGCCGA	Design primers
4506258	CCG-CCG-CCG-ACG-CCG-TCG-CCG-CCG	Design primers
4728537	TTGGCCATGGCCCTGGCCATGGCC	Design primers
4729728	GGCCTGGGCCTTGCCCTGGGTCTG	Design primers
4744458	GAGCCAGACCCAGGGCCAGACCCA	Design primers
4753177	GGGCCACGGTGGGGGCCGCGATGGAGGCCACGGTAG	Design primers
4794863	CGGCGGCGGCGATGGCGGCGGCGG	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

1162

GTGGCGGTGGCCGAGGCGGTGGCG