Microsatellites /Tandem Repeats database

Genome: Burkholderia thailandensis E264

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
161438CCGAAGCA-CCGAAGCA-CCGAAGCA-CCGAAGCADesign primers
239160GATCACCG-GATCACCG-GATCACCG-GATCACCG-GATCACCG-GATCACCGDesign primers
310390TGCGAAA-TGCGAAA-TGCGAAA-TGCGAAA-TGCGAAADesign primers
311415TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCGDesign primers
311446GCCGG-GCCGG-GCCGG-GCCGG-GCCGG-GCCGG-GCCGGDesign primers
315233CGCATC-CGCATC-CGCATC-CGCATC-CGCATCDesign primers
329700TCACG-TCACG-TCACG-TCACG-TCACG-TCACGDesign primers
364236CCGCTTCG-CCGCTTCG-CCGCTTCG-CCGCTTCG-CCGCTTCG-CCGCTTCG-CCGCTTCG-CCGCTTCG-CCGCTTCG-CCGCTTCG-CCGCTTCG-CCGCTTCG-CCGCTTCG-CCGCTTCGDesign primers
367790AGCGCCCA-AGCGCCCA-AGCGCCCADesign primers
390281CGCGTGT-CGCGTGT-CGCGTGT-CGCGTGTDesign primers
409935GCGACCGGC-GCGACCGGC-GCGACCGGC-GCGACCGGCDesign primers
412416GCCAACCGCTACA-GCCAACCGCTACA-GCCAACCGCTACADesign primers
440331AAGACCGC-AAGACCGC-AAGACCGC-AAGACCGC-AAGACCGC-AAGACCGC-AAGACCGCDesign primers
652743ACGAAACGGC-ACGAAACGGC-ACGAAACGGC-ACGAAACGGCDesign primers
706725GGCGTC-GGCGTC-GGCGTC-GGCGTCDesign primers
725298GCGACAG-GCGACAG-GCGACAG-GCGACAG-GCGACAG-GCGACAG-GCGACAGDesign primers
728060TCGGCA-TCGGCA-TCGGCA-TCGGCA-TCGGCA-TCGGCA-TCGGCA-TCGGCADesign primers
728155GGCGCGC-GGCGCGC-GGCGCGC-GGCGCGCDesign primers
732964GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCTDesign primers
743059GCCGATT-GCCGATT-GCCGATT-GCCGATT-GCCGATT-GCCGATTDesign primers
768590CGCCGAAA-CGCCGAAA-CGCCGAAA-CGCCGAAA-CGCCGAAA-CGCCGAAA-CGCCGAAA-CGCCGAAA-CGCCGAAA-CGCCGAAA-CGCCGAAA-CGCCGAAA-CGCCGAAADesign primers
794104CGTGGCCGTGCG-CGTGGCCGTGCG-CGTGGCCGTGCGDesign primers
944766CGAAGCA-CGAAGCA-CGAAGCA-CGAAGCA-CGAAGCA-CGAAGCA-CGAAGCA-CGAAGCA-CGAAGCA-CGAAGCA-CGAAGCA-CGAAGCA-CGAAGCA-CGAAGCADesign primers
958098GCCAAC-GCCAAC-GCCAAC-GCCAAC-GCCAAC-GCCAAC-GCCAAC-GCCAAC-GCCAAC-GCCAAC-GCCAAC-GCCAAC-GCCAAC-GCCAACDesign primers
989702CGGCTCGGCC-CGGCTCGGCC-CGGCTCGGCCDesign primers
991568GGCGGCGAAG-GGCGGCGAAG-GGCGGCGAAGDesign primers
1029708ACGACGGACG-ACGACGGACG-ACGACGGACG-ACGACGGACGDesign primers
1107666CCGCTTCGA-CCGCTTCGA-CCGCTTCGA-CCGCTTCGADesign primers
1131826CCGCATCGA-CCGCATCGA-CCGCATCGADesign primers
1134623CGAACGT-CGAACGT-CGAACGT-CGAACGT-CGAACGTDesign primers
1134718GCGCC-GCGCC-GCGCC-GCGCC-GCGCCDesign primers
1140078ACCGCGA-ACCGCGA-ACCGCGA-ACCGCGA-ACCGCGA-ACCGCGA-ACCGCGA-ACCGCGA-ACCGCGA-ACCGCGA-ACCGCGA-ACCGCGA-ACCGCGA-ACCGCGA-ACCGCGA-ACCGCGADesign primers
1140265GCCAAAC-GCCAAAC-GCCAAAC-GCCAAAC-GCCAAAC-GCCAAAC-GCCAAAC-GCCAAACDesign primers
1141172ACGCGCGACAGGCG-ACGCGCGACAGGCG-ACGCGCGACAGGCGDesign primers
1197959CCG-CCG-CCG-CCG-CCG-CCG-CCG-CCGDesign primers
1347885GCACGA-GCACGA-GCACGA-GCACGA-GCACGA-GCACGA-GCACGADesign primers
1416091CGCTGC-CGCTGC-CGCTGC-CGCTGCDesign primers
1428610GCCGCTGA-GCCGCTGA-GCCGCTGA-GCCGCTGA-GCCGCTGA-GCCGCTGADesign primers
1610088AGCGTCGG-AGCGTCGG-AGCGTCGG-AGCGTCGGDesign primers
1694408TGATCG-TGATCG-TGATCG-TGATCG-TGATCG-TGATCG-TGATCGDesign primers
1694451GCGAGT-GCGAGT-GCGAGT-GCGAGTDesign primers
1718273GCCACTC-GCCACTC-GCCACTC-GCCACTCDesign primers
1778140CGTGCGTA-CGTGCGTA-CGTGCGTADesign primers
1822803GGCTCGAA-GGCTCGAA-GGCTCGAA-GGCTCGAA-GGCTCGAADesign primers
1891034CGGCACGCC-CGGCACGCC-CGGCACGCCDesign primers
1953575CCGCGC-CCGCGC-CCGCGC-CCGCGCDesign primers
1975863GCGAGAACG-GCGAGAACG-GCGAGAACG-GCGAGAACG-GCGAGAACG-GCGAGAACGDesign primers
1985154GGCTCAAG-GGCTCAAG-GGCTCAAG-GGCTCAAG-GGCTCAAG-GGCTCAAG-GGCTCAAGDesign primers
2040799GTCGC-GTCGC-GTCGC-GTCGC-GTCGC-GTCGC-GTCGC-GTCGC-GTCGC-GTCGC-GTCGC-GTCGC-GTCGC-GTCGC-GTCGCDesign primers
2040875ACTCGGCC-ACTCGGCC-ACTCGGCCDesign primers
2050862ATCCGGC-ATCCGGC-ATCCGGC-ATCCGGC-ATCCGGC-ATCCGGC-ATCCGGC-ATCCGGC-ATCCGGCDesign primers
2133186TCGGTG-TCGGTG-TCGGTG-TCGGTGDesign primers
2250981CGCAGA-CGCAGA-CGCAGA-CGCAGADesign primers
2401005GCACGAAGCA-GCACGAAGCA-GCACGAAGCA-GCACGAAGCADesign primers
2401162TTGCCGCA-TTGCCGCA-TTGCCGCADesign primers
2405274ACGCCGAT-ACGCCGAT-ACGCCGAT-ACGCCGAT-ACGCCGAT-ACGCCGAT-ACGCCGATDesign primers
2424702ACGCACGA-ACGCACGA-ACGCACGADesign primers
2443476CGCGGGCAT-CGCGGGCAT-CGCGGGCATDesign primers
2476263CGTCGCGCT-CGTCGCGCT-CGTCGCGCTDesign primers
2496894CCGCCGCGC-CCGCCGCGC-CCGCCGCGCDesign primers
2574506GCCGTC-GCCGTC-GCCGTC-GCCGTC-GCCGTC-GCCGTCDesign primers
2628432CCGGCTCCA-CCGGCTCCA-CCGGCTCCA-CCGGCTCCADesign primers
2736157CGGGTTGAAATT-CGGGTTGAAATT-CGGGTTGAAATTDesign primers
2818368CGCATCT-CGCATCT-CGCATCT-CGCATCTDesign primers
2968718CGCGGTT-CGCGGTT-CGCGGTT-CGCGGTT-CGCGGTT-CGCGGTT-CGCGGTT-CGCGGTTDesign primers
3032222GCGTTGGCT-GCGTTGGCT-GCGTTGGCT-GCGTTGGCT-GCGTTGGCT-GCGTTGGCT-GCGTTGGCT-GCGTTGGCTDesign primers
3034517GAACCGGCAC-GAACCGGCAC-GAACCGGCACDesign primers
3173878GCACGTCCCGAACGG-GCACGTCCCGAACGG-GCACGTCCCGAACGG-GCACGTCCCGAACGG-GCACGTCCCGAACGG-GCACGTCCCGAACGG-GCACGTCCCGAACGG-GCACGTCCCGAACGG-GCACGTCCCGAACGG-GCACGTCCCGAACGGDesign primers
3209973CGCCTTC-CGCCTTC-CGCCTTC-CGCCTTC-CGCCTTC-CGCCTTC-CGCCTTC-CGCCTTC-CGCCTTC-CGCCTTC-CGCCTTCDesign primers
3210051GACTTCC-GACTTCC-GACTTCC-GACTTCC-GACTTCC-GACTTCC-GACTTCC-GACTTCC-GACTTCC-GACTTCC-GACTTCCDesign primers
3214615GTCGGT-GTCGGT-GTCGGT-GTCGGT-GTCGGT-GTCGGTDesign primers
3214789CTCGACGCA-CTCGACGCA-CTCGACGCA-CTCGACGCA-CTCGACGCA-CTCGACGCA-CTCGACGCA-CTCGACGCA-CTCGACGCA-CTCGACGCA-CTCGACGCADesign primers
3215283GCCGAC-GCCGAC-GCCGAC-GCCGAC-GCCGACDesign primers
3236357GCTCAACCG-GCTCAACCG-GCTCAACCG-GCTCAACCG-GCTCAACCG-GCTCAACCG-GCTCAACCG-GCTCAACCGDesign primers
3253101CTGATCGA-CTGATCGA-CTGATCGADesign primers
3259354GCGTTAGTCGTT-GCGTTAGTCGTT-GCGTTAGTCGTT-GCGTTAGTCGTT-GCGTTAGTCGTTDesign primers
3286348TCGCCGGAA-TCGCCGGAA-TCGCCGGAA-TCGCCGGAADesign primers
3286385CGCCGGGAT-CGCCGGGAT-CGCCGGGATDesign primers
3295415GCGCATCGG-GCGCATCGG-GCGCATCGG-GCGCATCGGDesign primers
3316838GACGCC-GACGCC-GACGCC-GACGCCDesign primers
3360064CGTTCGCT-CGTTCGCT-CGTTCGCT-CGTTCGCT-CGTTCGCT-CGTTCGCTDesign primers
3468727TTGGCG-TTGGCG-TTGGCG-TTGGCGDesign primers
3532172TCGTCGG-TCGTCGG-TCGTCGG-TCGTCGG-TCGTCGG-TCGTCGG-TCGTCGG-TCGTCGG-TCGTCGG-TCGTCGG-TCGTCGG-TCGTCGG-TCGTCGGDesign primers
3545124CGGCAAG-CGGCAAG-CGGCAAG-CGGCAAG-CGGCAAG-CGGCAAG-CGGCAAG-CGGCAAG-CGGCAAG-CGGCAAG-CGGCAAG-CGGCAAG-CGGCAAG-CGGCAAGDesign primers
3747047CGTGGT-CGTGGT-CGTGGT-CGTGGT-CGTGGT-CGTGGT-CGTGGTDesign primers
3751340TCGGCGCA-TCGGCGCA-TCGGCGCADesign primers

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