Microsatellites /Tandem Repeats database

Genome: Burkholderia thailandensis E264

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
161438CCGAAGCA-CCGAAGCA-CCGAAGCA-CCGAAGCADesign primers
195161CCGCAGATTCGCACCGAAGATTCGCACCGAAGATTCGCADesign primers
239159CGATCACC-GGATCACC-GGATCACC-GGATCACC-GGATCACC-GGATCACCDesign primers
310389GTGCGAA-ATGCGAA-ATGCGAA-ATGCGAA-ATGCGAA-ATGCGAADesign primers
311413CCTGC-CGTGC-CGTGC-CGTGC-CGTGC-CGTGCDesign primers
311444GGGCC-GGGCC-GGGCC-GGGCC-GGGCC-GGGCC-GGGCCDesign primers
315233CGCATC-CGCATC-CGCATC-CGCATC-CGCATCDesign primers
329698CCTCA-CGTCA-CGTCA-CGTCA-CGTCA-CGTCADesign primers
364233TTTCCGCT-TCGCCGCT-TCGCCGCT-TCGCCGCT-TCGCCGCT-TCGCCGCT-TCGCCGCT-TCGCCGCT-TCGCCGCT-TCGCCGCT-TCGCCGCT-TCGCCGCTDesign primers
367790AGCGCCCA-AGCGCCCA-AGCGCCCADesign primers
390281CGCGTGT-CGCGTGT-CGCGTGT-CGCGTGTDesign primers
409935GCGACCGGC-GCGACCGGC-GCGACCGGC-GCGACCGGCDesign primers
412413ACCGCCAACCGCTACAGCCAACCGCTACAGCCAACCGCTDesign primers
432348GGACGACGGC-AGACGACGGC-AGACGACGGCDesign primers
440329GTAAGACC-GCAAGACC-GCAAGACC-GCAAGACC-GCAAGACC-GCAAGACCDesign primers
652742AACGAAACGG-CACGAAACGG-CACGAAACGG-CACGAAACGGDesign primers
706725GGCGTC-GGCGTC-GGCGTC-GGCGTCDesign primers
725297CGCGACA-GGCGACA-GGCGACA-GGCGACA-GGCGACA-GGCGACADesign primers
728059GTCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGCDesign primers
728155GGCGCGC-GGCGCGC-GGCGCGC-GGCGCGCDesign primers
732963CGTTGC-TGTTGC-TGTTGC-TGTTGC-TGTTGC-TGTTGCDesign primers
743058GGCCGAT-TGCCGAT-TGCCGAT-TGCCGAT-TGCCGAT-TGCCGATDesign primers
768588GCCGCCGA-AACGCCGA-AACGCCGA-AACGCCGA-AACGCCGA-AACGCCGA-AACGCCGA-AACGCCGA-AACGCCGA-AACGCCGA-AACGCCGA-AACGCCGADesign primers
794100TGCCCGTGGCCGTGCGCGTGGCCGTGCGCGTGGCCGDesign primers
944764TGCGAAG-CACGAAG-CACGAAG-CACGAAG-CACGAAG-CACGAAG-CACGAAG-CACGAAG-CACGAAG-CACGAAG-CACGAAG-CACGAAGDesign primers
958095ATTGCC-AACGCC-AACGCC-AACGCC-AACGCC-AACGCC-AACGCC-AACGCC-AACGCC-AACGCC-AACGCC-AACGCCDesign primers
989693GGCTCGGCTCGGCTCGGCCCGGCTCGGCCCGGCTCGGCCCGGCTCGGCGCDesign primers
991567CGGCGGCGAA-GGGCGGCGAA-GGGCGGCGAADesign primers
1029706CCACGACGGA-CGACGACGGA-CGACGACGGA-CGACGACGGADesign primers
1069146GCCGGTATAGGCACGGCCGGTATAGGCACCACCGGTATAGGCACGDesign primers
1107666CCGCTTCGA-CCGCTTCGA-CCGCTTCGA-CCGCTTCGADesign primers
1131826CCGCATCGA-CCGCATCGA-CCGCATCGADesign primers
1134621GCCGAACGTCGAACGTCGAACGTCGAACGTCGAACGTCGAACGCCGAACGTCGAACDesign primers
1134718GCGCC-GCGCC-GCGCC-GCGCC-GCGCCDesign primers
1138799GCGAGTGCGGCTGCGAGTGCTGCTGCGAGTGCTGCTGCGAGTGCGGCGDesign primers
1140076CGACCGC-GAACCGC-GAACCGC-GAACCGC-GAACCGC-GAACCGC-GAACCGC-GAACCGC-GAACCGC-GAACCGC-GAACCGC-GAACCGC-GAACCGC-GAACCGC-GAACCGCDesign primers
1140263ATGCCAA-ACGCCAA-ACGCCAA-ACGCCAA-ACGCCAA-ACGCCAA-ACGCCAA-ACGCCAADesign primers
1141171CACGCGCGACAGGC-GACGCGCGACAGGC-GACGCGCGACAGGCDesign primers
1197959CCG-CCG-CCG-CCG-CCG-CCG-CCG-CCGDesign primers
1347884CGCACG-AGCACG-AGCACG-AGCACG-AGCACG-AGCACGDesign primers
1416091CGCTGC-CGCTGC-CGCTGC-CGCTGCDesign primers
1428609TGCCGCTG-AGCCGCTG-AGCCGCTG-AGCCGCTG-AGCCGCTG-AGCCGCTGDesign primers
1584321AAGCGGCCTCAAGCGACCTCAAGCGGCCGCDesign primers
1610088AGCGTCGG-AGCGTCGG-AGCGTCGG-AGCGTCGGDesign primers
1694407ATGATC-GTGATC-GTGATC-GTGATC-GTGATC-GTGATCDesign primers
1694449GTGCGA-GTGCGA-GTGCGA-GTGCGA-GTGCGADesign primers
1718273GCCACTC-GCCACTC-GCCACTC-GCCACTCDesign primers
1778140CGTGCGTA-CGTGCGTA-CGTGCGTADesign primers
1822803GGCTCGAA-GGCTCGAA-GGCTCGAA-GGCTCGAA-GGCTCGAADesign primers
1850813GTAATGAGGCAGTAACGAGGCAGTAACGAGGCAGTAATGGGGCADesign primers
1891034CGGCACGCC-CGGCACGCC-CGGCACGCCDesign primers
1953575CCGCGC-CCGCGC-CCGCGC-CCGCGCDesign primers
1975862AGCGAGAAC-GGCGAGAAC-GGCGAGAAC-GGCGAGAAC-GGCGAGAAC-GGCGAGAACDesign primers
1978673GCCATTGCCATC-GCCATTGCCATC-GCCATCGCCATCDesign primers
1985153TGGCTCAA-GGGCTCAA-GGGCTCAA-GGGCTCAA-GGGCTCAA-GGGCTCAADesign primers
2040797TTGTC-GCGTC-GCGTC-GCGTC-GCGTC-GCGTC-GCGTC-GCGTC-GCGTC-GCGTC-GCGTC-GCGTCDesign primers
2040872GCCACTCG-GCCACTCG-GCCACTCGDesign primers
2050860AGATCCG-GCATCCG-GCATCCG-GCATCCG-GCATCCG-GCATCCG-GCATCCG-GCATCCG-GCATCCGDesign primers
2133186TCGGTG-TCGGTG-TCGGTG-TCGGTGDesign primers
2250981CGCAGA-CGCAGA-CGCAGA-CGCAGADesign primers
2401001AGCGGCACGA-AGCAGCACGA-AGCAGCACGA-AGCAGCACGADesign primers
2401153ATTGCCGCGTTGCCGCATTGCCGCATTGCCGCATTGCCGCGTTGCCGCDesign primers
2405273CACGCCGA-TACGCCGA-TACGCCGA-TACGCCGA-TACGCCGA-TACGCCGADesign primers
2424702ACGCACGA-ACGCACGA-ACGCACGADesign primers
2443476CGCGGGCAT-CGCGGGCAT-CGCGGGCATDesign primers
2476263CGTCGCGCT-CGTCGCGCT-CGTCGCGCTDesign primers
2496894CCGCCGCGC-CCGCCGCGC-CCGCCGCGCDesign primers
2574505TGCCGT-CGCCGT-CGCCGT-CGCCGT-CGCCGT-CGCCGTDesign primers
2628432CCGGCTCCA-CCGGCTCCA-CCGGCTCCA-CCGGCTCCADesign primers
2736154ATCCGGGTTGAAATTCGGGTTGAAATTCGGGTTGAADesign primers
2768372GCAGGACCAAGCAGGACCACGCAGCACCAADesign primers
2818368CGCATCT-CGCATCT-CGCATCT-CGCATCTDesign primers
2904679CGGCGGCGGCTCCACCTC-CGGCGGCGGCTCCACCTC-CGGCGGCGGCTCCACGTCDesign primers
2968715GCGCGCG-GTTCGCG-GTTCGCG-GTTCGCG-GTTCGCG-GTTCGCG-GTTCGCG-GTTCGCG-GTTCGCGDesign primers
3032219GCCGCGTTG-GCTGCGTTG-GCTGCGTTG-GCTGCGTTG-GCTGCGTTG-GCTGCGTTG-GCTGCGTTG-GCTGCGTTGDesign primers
3034516GGAACCGGCA-CGAACCGGCA-CGAACCGGCADesign primers
3173874ACGCGCACGTCCCGA-ACGGGCACGTCCCGA-ACGGGCACGTCCCGA-ACGGGCACGTCCCGA-ACGGGCACGTCCCGA-ACGGGCACGTCCCGA-ACGGGCACGTCCCGA-ACGGGCACGTCCCGA-ACGGGCACGTCCCGA-ACGGGCACGTCCCGADesign primers
3209971CGCGCCT-TCCGCCT-TCCGCCT-TCCGCCT-TCCGCCT-TCCGCCT-TCCGCCT-TCCGCCT-TCCGCCTDesign primers
3210035CCGCCTTCCGCCTTCCGACTTCCGACTTCCGACTTCCGACTTCCGACTTCCGACTTCCGACTTCCGACTTCCGACTTCCGACTTDesign primers
3214614GGTCGG-TGTCGG-TGTCGG-TGTCGG-TGTCGG-TGTCGGDesign primers
3214788GCTCGACGC-ACTCGACGC-ACTCGACGC-ACTCGACGC-ACTCGACGC-ACTCGACGC-ACTCGACGC-ACTCGACGC-ACTCGACGC-ACTCGACGCDesign primers
3215278CCGATG-CCGACG-CCGACG-CCGACG-CCGACG-CCGACGDesign primers
3236355CCGCTCAAC-CGGCTCAAC-CGGCTCAAC-CGGCTCAAC-CGGCTCAAC-CGGCTCAAC-CGGCTCAAC-CGGCTCAACDesign primers
3253101CTGATCGA-CTGATCGA-CTGATCGADesign primers
3259353GGCGTTAGTCGT-TGCGTTAGTCGT-TGCGTTAGTCGT-TGCGTTAGTCGT-TGCGTTAGTCGTDesign primers
3286348TCGCCGGAA-TCGCCGGAA-TCGCCGGAA-TCGCCGGAADesign primers
3286385CGCCGGGAT-CGCCGGGAT-CGCCGGGATDesign primers
3295415GCGCATCGG-GCGCATCGG-GCGCATCGG-GCGCATCGGDesign primers
3316838GACGCC-GACGCC-GACGCC-GACGCCDesign primers
3360063CCGTTCGC-TCGTTCGC-TCGTTCGC-TCGTTCGC-TCGTTCGC-TCGTTCGCDesign primers
3468727TTGGCG-TTGGCG-TTGGCG-TTGGCGDesign primers
3532169CAATCGT-CGGTCGT-CGGTCGT-CGGTCGT-CGGTCGT-CGGTCGT-CGGTCGT-CGGTCGT-CGGTCGT-CGGTCGT-CGGTCGT-CGGTCGTDesign primers
3545122GCCGGCA-AGCGGCA-AGCGGCA-AGCGGCA-AGCGGCA-AGCGGCA-AGCGGCA-AGCGGCA-AGCGGCA-AGCGGCA-AGCGGCA-AGCGGCA-AGCGGCA-AGCGGCA-AGCGGCADesign primers
3563382CGCACGTCGATA-CGCACGTCGATA-CGCACGCCGATA-CGCACGTCGATCDesign primers
3701163AGTGCGGATGAAGTGCGAATGAAGTGCGGAGGADesign primers
3747045GGCGTG-GTCGTG-GTCGTG-GTCGTG-GTCGTG-GTCGTG-GTCGTG-GTCGTGDesign primers
3751340TCGGCGCA-TCGGCGCA-TCGGCGCADesign primers
3800015GCCGGCGGCACCCGGCGGCACCCGGCGGCAGCCGGCGGCAGCCGGCGGCTDesign primers

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