Microsatellites /Tandem Repeats database

Genome: Sodalis glossinidius str. morsitans

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
253336GCTGTA-GCTGTA-GCTGTA-GCTGTA-GCTGTA-GCTGTADesign primers
274000TCGCCC-TCGCCC-TCGCCC-TCGCCC-TCGCCC-TCGCCC-TCGCCC-TCGCCC-TCGCCCDesign primers
323229TCTGTC-TCTGTC-TCTGTC-TCTGTC-TCTGTC-TCTGTC-TCTGTC-TCTGTC-TCTGTC-TCTGTC-TCTGTC-TCTGTC-TCTGTC-TCTGTC-TCTGTC-TCTGTC-TCTGTCDesign primers
323935TATGTTTTTAA-TATGTTTTTAA-TATGTTTTTAA-TATGTTTTTAA-TATGTTTTTAADesign primers
473064TGATTGGC-TGATTGGC-TGATTGGC-TGATTGGC-TGATTGGC-TGATTGGC-TGATTGGC-TGATTGGCDesign primers
611965CGCGACAA-CGCGACAA-CGCGACAADesign primers
619134GCAAGC-GCAAGC-GCAAGC-GCAAGCDesign primers
922622CCAGCCC-CCAGCCC-CCAGCCC-CCAGCCCDesign primers
925779CAGCGCCAC-CAGCGCCAC-CAGCGCCAC-CAGCGCCACDesign primers
930695CAATACC-CAATACC-CAATACC-CAATACC-CAATACC-CAATACC-CAATACCDesign primers
1207824CCTGCCCAAT-CCTGCCCAAT-CCTGCCCAAT-CCTGCCCAATDesign primers
1362465ATGGGCT-ATGGGCT-ATGGGCT-ATGGGCT-ATGGGCTDesign primers
1450639CGC-CGC-CGC-CGC-CGC-CGC-CGC-CGC-CGCDesign primers
1455475CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCATDesign primers
1485846CTGCAA-CTGCAA-CTGCAA-CTGCAADesign primers
1498744CCGTGCCT-CCGTGCCT-CCGTGCCT-CCGTGCCT-CCGTGCCT-CCGTGCCT-CCGTGCCTDesign primers
1567499TGGCAA-TGGCAA-TGGCAA-TGGCAA-TGGCAA-TGGCAA-TGGCAA-TGGCAA-TGGCAA-TGGCAA-TGGCAA-TGGCAA-TGGCAA-TGGCAA-TGGCAA-TGGCAADesign primers
1636942TGACACCGC-TGACACCGC-TGACACCGC-TGACACCGC-TGACACCGC-TGACACCGC-TGACACCGC-TGACACCGC-TGACACCGC-TGACACCGC-TGACACCGC-TGACACCGC-TGACACCGC-TGACACCGCDesign primers
1671370GGCGGTAAT-GGCGGTAAT-GGCGGTAAT-GGCGGTAAT-GGCGGTAATDesign primers
1702921CCGGAG-CCGGAG-CCGGAG-CCGGAGDesign primers
1731944GCTGGATGA-GCTGGATGA-GCTGGATGA-GCTGGATGA-GCTGGATGA-GCTGGATGA-GCTGGATGA-GCTGGATGADesign primers
1925034CTGAGG-CTGAGG-CTGAGG-CTGAGG-CTGAGG-CTGAGG-CTGAGG-CTGAGG-CTGAGG-CTGAGG-CTGAGG-CTGAGG-CTGAGGDesign primers
1947897GCTATCC-GCTATCC-GCTATCC-GCTATCC-GCTATCC-GCTATCCDesign primers
2041547GCTATCC-GCTATCC-GCTATCC-GCTATCC-GCTATCC-GCTATCC-GCTATCCDesign primers
2089477AATGTC-AATGTC-AATGTC-AATGTC-AATGTC-AATGTC-AATGTC-AATGTC-AATGTC-AATGTCDesign primers
2179162ATCGGCA-ATCGGCA-ATCGGCA-ATCGGCA-ATCGGCA-ATCGGCADesign primers
2249599CTGGCCCAC-CTGGCCCAC-CTGGCCCAC-CTGGCCCAC-CTGGCCCACDesign primers
2294757GCTCCA-GCTCCA-GCTCCA-GCTCCA-GCTCCA-GCTCCA-GCTCCA-GCTCCADesign primers
2394415AGGGCTG-AGGGCTG-AGGGCTG-AGGGCTGDesign primers
2430553AAAAAACCA-AAAAAACCA-AAAAAACCADesign primers
2509367GGCTGAG-GGCTGAG-GGCTGAG-GGCTGAG-GGCTGAG-GGCTGAG-GGCTGAG-GGCTGAG-GGCTGAG-GGCTGAG-GGCTGAGDesign primers
2604174GGGCTTT-GGGCTTT-GGGCTTT-GGGCTTT-GGGCTTT-GGGCTTT-GGGCTTT-GGGCTTT-GGGCTTT-GGGCTTT-GGGCTTT-GGGCTTT-GGGCTTT-GGGCTTT-GGGCTTT-GGGCTTT-GGGCTTTDesign primers
2608298GCTGGTGGC-GCTGGTGGC-GCTGGTGGC-GCTGGTGGC-GCTGGTGGCDesign primers
2669047CGTCA-CGTCA-CGTCA-CGTCA-CGTCA-CGTCADesign primers
2771005CCTGT-CCTGT-CCTGT-CCTGT-CCTGT-CCTGT-CCTGT-CCTGT-CCTGTDesign primers
2811762ACGGGGTA-ACGGGGTA-ACGGGGTA-ACGGGGTA-ACGGGGTA-ACGGGGTA-ACGGGGTA-ACGGGGTA-ACGGGGTA-ACGGGGTA-ACGGGGTA-ACGGGGTADesign primers
2962462CGGTAA-CGGTAA-CGGTAA-CGGTAA-CGGTAA-CGGTAA-CGGTAA-CGGTAA-CGGTAA-CGGTAADesign primers
2987495GGGTGGT-GGGTGGT-GGGTGGT-GGGTGGTDesign primers
3141041GCCTGTGA-GCCTGTGA-GCCTGTGA-GCCTGTGA-GCCTGTGADesign primers
3158138GCCACC-GCCACC-GCCACC-GCCACCDesign primers
3250203AGG-AGG-AGG-AGG-AGG-AGG-AGG-AGG-AGG-AGG-AGGDesign primers
3326502TGGCGATAA-TGGCGATAA-TGGCGATAA-TGGCGATAADesign primers
3377725GCGGCGT-GCGGCGT-GCGGCGT-GCGGCGT-GCGGCGT-GCGGCGTDesign primers
3440360TCTGCACAT-TCTGCACAT-TCTGCACAT-TCTGCACAT-TCTGCACAT-TCTGCACAT-TCTGCACAT-TCTGCACAT-TCTGCACAT-TCTGCACAT-TCTGCACAT-TCTGCACAT-TCTGCACAT-TCTGCACAT-TCTGCACAT-TCTGCACAT-TCTGCACAT-TCTGCACAT-TCTGCACAT-TCTGCACAT-TCTGCACATDesign primers
3529235ATCGACA-ATCGACA-ATCGACA-ATCGACA-ATCGACA-ATCGACA-ATCGACADesign primers
3558725GAACCAAGA-GAACCAAGA-GAACCAAGADesign primers
3609603GCGATAA-GCGATAA-GCGATAA-GCGATAA-GCGATAADesign primers
3689961AGTTATTAT-AGTTATTAT-AGTTATTAT-AGTTATTAT-AGTTATTAT-AGTTATTAT-AGTTATTAT-AGTTATTATDesign primers
3773884TGTAGGGT-TGTAGGGT-TGTAGGGT-TGTAGGGTDesign primers
3954526GTAATGGC-GTAATGGC-GTAATGGCDesign primers
3959305TGTCCACGA-TGTCCACGA-TGTCCACGADesign primers
3966174TGGCGGTC-TGGCGGTC-TGGCGGTCDesign primers
4013695CGCAGTTGC-CGCAGTTGC-CGCAGTTGC-CGCAGTTGC-CGCAGTTGCDesign primers
4018168GCCAACAC-GCCAACAC-GCCAACAC-GCCAACAC-GCCAACACDesign primers
4053595CGTTTACC-CGTTTACC-CGTTTACC-CGTTTACCDesign primers
4126321CGCCAT-CGCCAT-CGCCAT-CGCCAT-CGCCAT-CGCCATDesign primers
4152314CGGTTCAGC-CGGTTCAGC-CGGTTCAGC-CGGTTCAGC-CGGTTCAGC-CGGTTCAGC-CGGTTCAGCDesign primers

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