Microsatellites /Tandem Repeats database

Genome: Sodalis glossinidius str. morsitans

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
253334TCGCTG-TAGCTG-TAGCTG-TAGCTG-TAGCTG-TAGCTGDesign primers
273999TTCGCC-CTCGCC-CTCGCC-CTCGCC-CTCGCC-CTCGCC-CTCGCC-CTCGCC-CTCGCC-CTCGCCDesign primers
323225TATTTC-TGTCTC-TGTCTC-TGTCTC-TGTCTC-TGTCTC-TGTCTC-TGTCTC-TGTCTC-TGTCTC-TGTCTC-TGTCTC-TGTCTC-TGTCTC-TGTCTC-TGTCTCDesign primers
323933TGTATGTTTTT-AATATGTTTTT-AATATGTTTTT-AATATGTTTTT-AATATGTTTTT-AATATGTTTTTDesign primers
473063TTGATTGG-CTGATTGG-CTGATTGG-CTGATTGG-CTGATTGG-CTGATTGG-CTGATTGG-CTGATTGGDesign primers
611965CGCGACAA-CGCGACAA-CGCGACAADesign primers
619134GCAAGC-GCAAGC-GCAAGC-GCAAGCDesign primers
922622CCAGCCC-CCAGCCC-CCAGCCC-CCAGCCCDesign primers
925779CAGCGCCAC-CAGCGCCAC-CAGCGCCAC-CAGCGCCACDesign primers
930693CACAATA-CCCAATA-CCCAATA-CCCAATA-CCCAATA-CCCAATA-CCCAATA-CCCAATADesign primers
1207823ACCTGCCCAA-TCCTGCCCAA-TCCTGCCCAA-TCCTGCCCAADesign primers
1362465ATGGGCT-ATGGGCT-ATGGGCT-ATGGGCT-ATGGGCTDesign primers
1450639CGC-CGC-CGC-CGC-CGC-CGC-CGC-CGC-CGCDesign primers
1455474CCGGCA-TCGGCA-TCGGCA-TCGGCA-TCGGCA-TCGGCADesign primers
1485846CTGCAA-CTGCAA-CTGCAA-CTGCAADesign primers
1498743GCCGTGCC-TCCGTGCC-TCCGTGCC-TCCGTGCC-TCCGTGCC-TCCGTGCC-TCCGTGCC-TCCGTGCCDesign primers
1567497GCTGGC-AATGGC-AATGGC-AATGGC-AATGGC-AATGGC-AATGGC-AATGGC-AATGGC-AATGGC-AATGGC-AATGGC-AATGGC-AATGGC-AATGGC-AATGGCDesign primers
1636941TTGACACCG-CTGACACCG-CTGACACCG-CTGACACCG-CTGACACCG-CTGACACCG-CTGACACCG-CTGACACCG-CTGACACCG-CTGACACCG-CTGACACCG-CTGACACCG-CTGACACCG-CTGACACCGDesign primers
1671370GGCGGTAAT-GGCGGTAAT-GGCGGTAAT-GGCGGTAAT-GGCGGTAATDesign primers
1702921CCGGAG-CCGGAG-CCGGAG-CCGGAGDesign primers
1731943TGCTGGATG-AGCTGGATG-AGCTGGATG-AGCTGGATG-AGCTGGATG-AGCTGGATG-AGCTGGATG-AGCTGGATGDesign primers
1925032CTCTGA-GGCTGA-GGCTGA-GGCTGA-GGCTGA-GGCTGA-GGCTGA-GGCTGA-GGCTGA-GGCTGA-GGCTGA-GGCTGADesign primers
1947896TGCTATC-CGCTATC-CGCTATC-CGCTATC-CGCTATC-CGCTATCDesign primers
2041546TGCTATC-CGCTATC-CGCTATC-CGCTATC-CGCTATC-CGCTATCDesign primers
2089476TAATGT-CAATGT-CAATGT-CAATGT-CAATGT-CAATGT-CAATGT-CAATGT-CAATGT-CAATGTDesign primers
2179161GATCGGC-AATCGGC-AATCGGC-AATCGGC-AATCGGC-AATCGGCDesign primers
2249599CTGGCCCAC-CTGGCCCAC-CTGGCCCAC-CTGGCCCAC-CTGGCCCACDesign primers
2294756TGCTCC-AGCTCC-AGCTCC-AGCTCC-AGCTCC-AGCTCC-AGCTCC-AGCTCCDesign primers
2394415AGGGCTG-AGGGCTG-AGGGCTG-AGGGCTGDesign primers
2430553AAAAAACCA-AAAAAACCA-AAAAAACCADesign primers
2509365TTGGCTG-AGGGCTG-AGGGCTG-AGGGCTG-AGGGCTG-AGGGCTG-AGGGCTG-AGGGCTG-AGGGCTGDesign primers
2604172CGGGGCT-TTGGGCT-TTGGGCT-TTGGGCT-TTGGGCT-TTGGGCT-TTGGGCT-TTGGGCT-TTGGGCT-TTGGGCT-TTGGGCT-TTGGGCT-TTGGGCT-TTGGGCT-TTGGGCTDesign primers
2608298GCTGGTGGC-GCTGGTGGC-GCTGGTGGC-GCTGGTGGC-GCTGGTGGCDesign primers
2669045CCCGT-CACGT-CACGT-CACGT-CACGT-CACGTDesign primers
2771004GCCTG-TCCTG-TCCTG-TCCTG-TCCTG-TCCTG-TCCTG-TCCTGDesign primers
2811760ACACGGGG-TAACGGGG-TAACGGGG-TAACGGGG-TAACGGGG-TAACGGGG-TAACGGGG-TAACGGGG-TAACGGGG-TAACGGGG-TAACGGGG-TAACGGGGDesign primers
2962461GCGGTA-ACGGTA-ACGGTA-ACGGTA-ACGGTA-ACGGTA-ACGGTA-ACGGTA-ACGGTA-ACGGTADesign primers
2987495GGGTGGT-GGGTGGT-GGGTGGT-GGGTGGTDesign primers
3141039GCGCCTGT-GAGCCTGT-GAGCCTGT-GAGCCTGT-GAGCCTGT-GAGCCTGTDesign primers
3158138GCCACC-GCCACC-GCCACC-GCCACCDesign primers
3250201GTA-GGA-GGA-GGA-GGA-GGA-GGA-GGA-GGA-GGA-GGA-GGADesign primers
3326502TGGCGATAA-TGGCGATAA-TGGCGATAA-TGGCGATAADesign primers
3377724AGCGGCG-TGCGGCG-TGCGGCG-TGCGGCG-TGCGGCG-TGCGGCGDesign primers
3440358AATCTGCAC-ATTCTGCAC-ATTCTGCAC-ATTCTGCAC-ATTCTGCAC-ATTCTGCAC-ATTCTGCAC-ATTCTGCAC-ATTCTGCAC-ATTCTGCAC-ATTCTGCAC-ATTCTGCAC-ATTCTGCAC-ATTCTGCAC-ATTCTGCAC-ATTCTGCAC-ATTCTGCAC-ATTCTGCAC-ATTCTGCAC-ATTCTGCACDesign primers
3529234TATCGAC-AATCGAC-AATCGAC-AATCGAC-AATCGAC-AATCGACDesign primers
3558725GAACCAAGA-GAACCAAGA-GAACCAAGADesign primers
3609603GCGATAA-GCGATAA-GCGATAA-GCGATAA-GCGATAADesign primers
3689960GAGTTATTA-TAGTTATTA-TAGTTATTA-TAGTTATTA-TAGTTATTA-TAGTTATTA-TAGTTATTA-TAGTTATTADesign primers
3773884TGTAGGGT-TGTAGGGT-TGTAGGGT-TGTAGGGTDesign primers
3954526GTAATGGC-GTAATGGC-GTAATGGCDesign primers
3959305TGTCCACGA-TGTCCACGA-TGTCCACGADesign primers
3966174TGGCGGTC-TGGCGGTC-TGGCGGTCDesign primers
4013695CGCAGTTGC-CGCAGTTGC-CGCAGTTGC-CGCAGTTGC-CGCAGTTGCDesign primers
4018167AGCCAACA-CGCCAACA-CGCCAACA-CGCCAACA-CGCCAACA-CGCCAACADesign primers
4053595CGTTTACC-CGTTTACC-CGTTTACC-CGTTTACCDesign primers
4126318CAGCGC-CATCGC-CATCGC-CATCGC-CATCGC-CATCGCDesign primers
4152312GTCGGTTCA-GCCGGTTCA-GCCGGTTCA-GCCGGTTCA-GCCGGTTCA-GCCGGTTCADesign primers

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