Microsatellites /Tandem Repeats database

Genome: Sodalis glossinidius str. morsitans

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
101953GCCAGTAGT-GCCAGTAGT-GCCAGTAATDesign primers
253332TTTCGC-TGTAGC-TGTAGC-TGTAGC-TGTAGC-TGTAGCDesign primers
273994TCGGTT-TCGCCC-TCGCCC-TCGCCC-TCGCCC-TCGCCC-TCGCCC-TCGCCC-TCGCCCDesign primers
323221TATTTA-TTTCTG-TCTCTG-TCTCTG-TCTCTG-TCTCTG-TCTCTG-TCTCTG-TCTCTG-TCTCTG-TCTCTG-TCTCTG-TCTCTG-TCTCTG-TCTCTG-TCTCTGDesign primers
323928TTATCTGTATG-TTTTTAATATG-TTTTTAATATG-TTTTTAATATG-TTTTTAATATG-TTTTTAATATGDesign primers
440827TATTTTTATTCATTTTCATTTATTTTAATADesign primers
448556AAAGCGTTACAAAACCATTACAAAGGCGTTACGDesign primers
473061TCTTGATT-GGCTGATT-GGCTGATT-GGCTGATT-GGCTGATT-GGCTGATT-GGCTGATT-GGCTGATTDesign primers
553416GGCGGCATGGGTGGCATGGGCGGCATGDesign primers
611963AGCGCGAC-AACGCGAC-AACGCGAC-AACGCGACDesign primers
619133GGCAAG-CGCAAG-CGCAAG-CGCAAGDesign primers
728599GCGATATCTTTGGCGATGTGTTTGGCGATATTTTTGDesign primers
739007CCGGCGCGCTCGGGCGCGATCTGGCCCGCTDesign primers
744574CGCCGGCGCAGGCGCTGGCGGCGGDesign primers
822867TTGGCGG-ATGGCGG-ATGGCGG-ATGGCGGDesign primers
893499ATCGATATGGATATCGAAATCTATDesign primers
922620CGCCAGC-CCCCAGC-CCCCAGC-CCCCAGCDesign primers
925778ACAGCGCCA-CCAGCGCCA-CCAGCGCCA-CCAGCGCCADesign primers
930699ACCCAAT-ACCCAAT-ACCCAAT-ACCCAAT-ACCCAAT-ACCCAAT-ACCCAATDesign primers
1079270AATAAAAATTAATAATCATTAATAAAATTCDesign primers
1105060TTTGCCGTTGAATACGCCGTTGAATACGCCGTTGAADesign primers
1207822CACCTGCCCA-ATCCTGCCCA-ATCCTGCCCA-ATCCTGCCCADesign primers
1362463TAATGGG-CTATGGG-CTATGGG-CTATGGG-CTATGGG-CTATGGGDesign primers
1369174CGGCGC-TGGCGC-TGGCGC-TGGCGCDesign primers
1438375GAGGCAGAGGAAGAAGCAGTGGCADesign primers
1450638TCG-CCG-CCG-CCG-CCG-CCG-CCG-CCG-CCG-CCGDesign primers
1455473TCCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGCDesign primers
1485842GCACCT-GCAACT-GCAACT-GCAACT-GCAACT-GCACCTDesign primers
1498740CCTGCCGT-GCCTCCGT-GCCTCCGT-GCCTCCGT-GCCTCCGT-GCCTCCGT-GCCTCCGT-GCCTCCGTDesign primers
1531009TCTTCATCGTCATATTCATCTTGADesign primers
1567495CGGCTG-GCAATG-GCAATG-GCAATG-GCAATG-GCAATG-GCAATG-GCAATG-GCAATG-GCAATG-GCAATG-GCAATG-GCAATG-GCAATG-GCAATG-GCAATGDesign primers
1582827CGGTGCTGCAAACGCAGCTGCAAACGCAGCTGCAAADesign primers
1636939TATTGACAC-CGCTGACAC-CGCTGACAC-CGCTGACAC-CGCTGACAC-CGCTGACAC-CGCTGACAC-CGCTGACAC-CGCTGACAC-CGCTGACAC-CGCTGACAC-CGCTGACAC-CGCTGACAC-CGCTGACACDesign primers
1671366TGTGGGCGG-TAATGGCGG-TAATGGCGG-TAATGGCGG-TAATGGCGG-TAATGGCGGDesign primers
1702919AACCGG-AGCCGG-AGCCGG-AGCCGGDesign primers
1731940TTTTGCTGG-ATGAGCTGG-ATGAGCTGG-ATGAGCTGG-ATGAGCTGG-ATGAGCTGG-ATGAGCTGG-ATGAGCTGGDesign primers
1753772CCGCCGGCGCCGCCGCGGCCGTCGDesign primers
1814339TGTCGTGTATTGTCGTGCTTTGTTGTGTTTTGTCGCCTATDesign primers
1925028TTGTCT-CTGAGG-CTGAGG-CTGAGG-CTGAGG-CTGAGG-CTGAGG-CTGAGG-CTGAGG-CTGAGG-CTGAGG-CTGAGGDesign primers
1947894TATGCTA-TCCGCTA-TCCGCTA-TCCGCTA-TCCGCTA-TCCGCTADesign primers
1982800AGGAGA-AGGAGA-TAGAGA-AGGAGA-AAGAGA-AGGATADesign primers
2041544TATGCTA-TCCGCTA-TCCGCTA-TCCGCTA-TCCGCTA-TCCGCTA-TCCGCTA-TCCGCTADesign primers
2051642GGGCCAGC-TGGCCAGC-TGGCCAGCDesign primers
2089473TAATAA-TGTCAA-TGTCAA-TGTCAA-TGTCAA-TGTCAA-TGTCAA-TGTCAA-TGTCAADesign primers
2179160TGATCGG-CAATCGG-CAATCGG-CAATCGG-CAATCGG-CAATCGGDesign primers
2245886ATGCCTGTTT-TCGCCTGTTT-TCGCCTGTTTDesign primers
2249595GCTGCTGGC-CCACCTGGC-CCACCTGGC-CCACCTGGC-CCACCTGGC-CCACCTGGCDesign primers
2294754GGTGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCTDesign primers
2337648CTGTCG-CTGTCG-CTGCCG-CTGTTGDesign primers
2394414AAGGGCT-GAGGGCT-GAGGGCT-GAGGGCTDesign primers
2430551CCAAAAAACCAAAAAAACCAAAAAAACDesign primers
2509363CTTTGGC-TGAGGGC-TGAGGGC-TGAGGGC-TGAGGGC-TGAGGGC-TGAGGGC-TGAGGGC-TGAGGGCDesign primers
2604168AGCACGG-GGCTTTG-GGCTTTG-GGCTTTG-GGCTTTG-GGCTTTG-GGCTTTG-GGCTTTG-GGCTTTG-GGCTTTG-GGCTTTG-GGCTTTG-GGCTTTG-GGCTTTG-GGCTTTG-GGCTTTG-GGCTTTG-GGCTTTGDesign primers
2608295GGAGCTGGT-GGCGCTGGT-GGCGCTGGT-GGCGCTGGT-GGCGCTGGTDesign primers
2669044GCCCG-TCACG-TCACG-TCACG-TCACG-TCACGDesign primers
2735115AGC-AGC-AGC-ACC-AGC-ACC-ACC-AGCDesign primers
2771000GCTAG-CCTGT-CCTGT-CCTGT-CCTGT-CCTGT-CCTGT-CCTGT-CCTGTDesign primers
2774629CCAGCACCATCAACAGCACCATCADesign primers
2811756GGTTACAC-GGGGTAAC-GGGGTAAC-GGGGTAAC-GGGGTAAC-GGGGTAAC-GGGGTAAC-GGGGTAAC-GGGGTAAC-GGGGTAAC-GGGGTAAC-GGGGTAACDesign primers
2962456CGCTGG-CGGTAA-CGGTAA-CGGTAA-CGGTAA-CGGTAA-CGGTAA-CGGTAA-CGGTAADesign primers
2987494CGGGTGG-TGGGTGG-TGGGTGG-TGGGTGGDesign primers
3009055AAAATAAAAATAATAATAAATATADesign primers
3040554GCCAGCGCCAGACCCAGCGCCAGADesign primers
3141037CGGCGCCT-GTGAGCCT-GTGAGCCT-GTGAGCCT-GTGAGCCT-GTGAGCCTDesign primers
3158137TGCCAC-CGCCAC-CGCCAC-CGCCACDesign primers
3167633ATAAAATAATAAAAAATTAAATAGADesign primers
3245885TTGGCGG-ATGGCGG-ATGGCGG-ATGGCGGDesign primers
3250198GGG-GTA-GGA-GGA-GGA-GGA-GGA-GGA-GGA-GGA-GGA-GGADesign primers
3326501CTGGCGATA-ATGGCGATA-ATGGCGATA-ATGGCGATA-ATGGCGATADesign primers
3377723CAGCGGC-GTGCGGC-GTGCGGC-GTGCGGC-GTGCGGC-GTGCGGCDesign primers
3378336CGACAAAACACAACAAAGCACGACAATACADesign primers
3440354GAAAAATCT-GCACATTCT-GCACATTCT-GCACATTCT-GCACATTCT-GCACATTCT-GCACATTCT-GCACATTCT-GCACATTCT-GCACATTCT-GCACATTCT-GCACATTCT-GCACATTCT-GCACATTCT-GCACATTCT-GCACATTCT-GCACATTCT-GCACATTCT-GCACATTCT-GCACATTCTDesign primers
3446988GGCGACGGCGGGCGGCGGTGGGCTACAGCGDesign primers
3529233TTATCGA-CAATCGA-CAATCGA-CAATCGA-CAATCGA-CAATCGADesign primers
3558724GGAACCAAG-AGAACCAAG-AGAACCAAGDesign primers
3609601ACGCGAT-AAGCGAT-AAGCGAT-AAGCGAT-AAGCGATDesign primers
3671825ATTAATATTATTATAAATATTAAADesign primers
3689956ATGTGAGTT-ATTATAGTT-ATTATAGTT-ATTATAGTT-ATTATAGTT-ATTATAGTT-ATTATAGTT-ATTATAGTTDesign primers
3752520TATCCCCC-TATCCCCC-TATTCCCCDesign primers
3773882GATGTAGG-GTTGTAGG-GTTGTAGG-GTTGTAGGDesign primers
3954524GGGTAATGGCGTAATGGCGTAATGDesign primers
3959302CGGTGTCCACGATGTCCACGATGTCCADesign primers
3966172TTTGGCGGTCTGGCGGTCTGGCGGDesign primers
4013686GGCAGATGT-CGCAGTTGC-CGCAGTTGC-CGCAGTTGC-CGCAGTTGC-CGCAGTTGCDesign primers
4018164GCCAGCCA-ACACGCCA-ACACGCCA-ACACGCCA-ACACGCCA-ACACGCCADesign primers
4053594TCGTTTAC-CCGTTTAC-CCGTTTAC-CCGTTTACDesign primers
4126317GCAGCG-CCATCG-CCATCG-CCATCG-CCATCG-CCATCGDesign primers
4132895GAAGCCAAAGCCGAAGCGGAAGCGDesign primers
4144653CTATTCTGG-CTATTCTGG-CTATGCTGGDesign primers
4152310GCGTCGGTT-CAGCCGGTT-CAGCCGGTT-CAGCCGGTT-CAGCCGGTT-CAGCCGGTTDesign primers

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