Microsatellites /Tandem Repeats database

Genome: Rhodoferax ferrireducens T118

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
22720CTCCTGCTCGTGCTGCTGCTCCTTDesign primers
205915CAAGGCGGCCAACGCGGCCAAGGCTGCDesign primers
259815GGACAA-GGACAA-AGACAA-AGACAADesign primers
484371GCA-GGC-GGC-GCT-GGC-GGC-GCC-GGC-GGCDesign primers
575431GGTGCCGGCGCCAGTGCCGGTGCCDesign primers
579897TGGTGCCGTTCGTGCCGTTGGTGCCGGDesign primers
580964CCAAACCTGACGCAGCCAAGCCCGACGCCGTCAAACTTGACGCGGDesign primers
684985TACGGC-TACGGC-TATGGC-TACGGTDesign primers
811722GCCAGT-GCAAGT-GCCAGC-GCCAGC-GCCAGCDesign primers
830360CCTGCGCCTGCCACTGCGCCTGCGDesign primers
970946CAAGGACAGGGACAAGGACAAGGADesign primers
981874CACCAG-CACCAG-CGCCAG-CACCACDesign primers
1057536TGGCCCTGGCCGTGGGCCTGGCCTDesign primers
1064806GGCGTCGCCGTCGGCGTCGGCGCCDesign primers
1069673GCGGTG-GCAGTG-GCAGTG-ACGGTGDesign primers
1202680GGT-GGC-GGC-GGC-GGT-GGC-GGT-GGCDesign primers
1214450TGCCCATGC-CGCCCATGC-CGCCCATGCDesign primers
1244793GAAGACAAGAAAGCCGCTGAAGACAAGAAAAAAGCCGCTGAAGACAAGAAGAAAGCTGCTGAADesign primers
1326986CGCCG-CGCCG-CGCCC-GGCCG-CGCCCDesign primers
1442856ACTGCAAGAGAATTCAAGAGAGTTCAAGAGDesign primers
1486097CGGAGT-CAGAAG-CAGAAG-CAGAAG-CAGAAG-CAGAAG-CAGAAG-CAGAAG-CAGAAGDesign primers
1636025CGCCGGCAGCGCCAGCAGCGCCGGCGGDesign primers
1648924GAGCCA-ACGCCA-GCACCA-ACGCCA-ACGCCA-ACGCCADesign primers
1648961CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAGDesign primers
1714513CGGCGT-GGGAGT-CGGAGT-CGGTGT-CGGTGT-CGGTGT-CGGTGT-CGGTGT-CGGTGT-CGGAGT-CGGAGT-CGGAGT-CGGAGT-CGGAGT-CGGAGT-CGGAGT-CGGAGT-CGGAGT-CGGAGT-CGGAGT-CGGAGT-CGGAGT-CGGAGT-CGGAGTDesign primers
1736321ATCTGCTGGCGA-GCCTGCTGGCGA-GCCTGCTGGCGADesign primers
1770952GGCGCTCAGGCGTTCAGGCGTTCADesign primers
1857830TTCTGCCGCCAC-GTCCGTCACCAC-GTCCGTCACCAC-GTCCGTCACCAC-GTCCGTCACCAC-GTCCGTCACCACDesign primers
1882879TGCTACCCATGCTGCCCATGCCACCCADesign primers
1911709CAGCCCCAGCACCAGGCCCAGCCCDesign primers
1974946GCACCACCACCAGCGCCAGTACCADesign primers
1989319GATGGCGCCACCGCCCATGGCGCCACCTGCCATGGCGCCACCTGCDesign primers
1997603GTGGCCATGGCCGTGGCGGTGGACDesign primers
2098621GGCTACTTTCTTAGCCGGAGCGACTTTCTTGGCCGGCGCTACTTTTTTAGCGGGDesign primers
2117483TGGTT-TGGTT-TGGTT-TGGAT-TGGTTDesign primers
2314285AGCCGCAGAAGCTGCAGAAGCCGCAGCDesign primers
2314685CCTGGGGCACCTGGTGCACCTGGTGCADesign primers
3000002TGGAGGTGAAGGTGTAGGTGTAGGDesign primers
3043192GGCCGC-GCCCGC-GCCCGC-GCCCGCDesign primers
3073562CGTTGGCATTGGCGGTGGCGATGGDesign primers
3118000CCAGCACCACCACCAGCGCCAGCGDesign primers
3123986CGGGG-CTGGG-CTGGG-CTGGG-CTGGGDesign primers
3134618ACTTTCGTCAGTTTCGTCAGTTTCGTCDesign primers
3179506AGCCGCTGGCCGCTCGCCGCTGGCCGCTDesign primers
3201162GCGTCA-GCGTCA-GCGTTA-GCGTCADesign primers
3330587CAGGCG-CAGGCG-CTGGCG-CAGGCADesign primers
3373441TAGCCCTGT-CAGCCCTGT-CAGCCCTGTDesign primers
3393958CGAGTTGGAGTACGACCTGGAGTACGGGTTGGAGTADesign primers
3408663TCGGCACCGTGGTAACGCGCATTTTCACCGTGGTGACGCGCAGGGCCACCGTGGTGACGCGCATTTTCACCGTGGTGACGCGCAGGGACACCGTGGTAACGCGCADesign primers
3451665GAGCGCCGCAGCGCCGGAGCGCCADesign primers
3504242GGCGTTGGCATTGCCGTTGCCGTTDesign primers
3545349CTGATCCCGCTGATCGCGCTGATCCTGDesign primers
3628819GTG-GTG-GCG-GTG-GCG-GTG-GCG-GTG-GCG-GTGDesign primers
3634011AAGTCAAAGGCACAGTCAAAGACADesign primers
3720057CCCGTGAAGAAAGCTGCA-CCAGCCAAGAAAGCTGCA-CCAGCCAAGAAAGCTGCA-CCAGCCAAGAAAGCTGCA-CCGGCTAAGAAAGCTGCA-CCGGCTAAGAAAGCTGCA-CCGGCTAAGAAAGCTGCA-CCGGCTAAGAAAGCTGCA-CCAGCCAAGAAAGCTGCA-CCAGCCAAGAAAGCTGCA-CCGGCTAAGAAAGCTGCA-CCAGCCAAGAAAGCTGCA-CCGGCTAAGAAAGCTGCA-CCGGCTAAGAAAGCTGCA-CCGGCTAAGAAAGCTGCA-CCGGCCAAGAAAGCTGCA-CCGGCCAAGAAAGCTGCA-CCGGCTAAGAAAGCTGCA-CCGGCTAAGAAAGCTGCA-CCGGCTAAGAAAGCTGCA-CCAGCCAAGAAAGCTGCA-CCAGCTAAGAAAGCTGCADesign primers
3720454CGGCTAAGAAGGCTGCAC-CGGCTAAGAAGGCTGCAC-CGGCTAAGAAGGCTGCAC-CGGCTAAGAAGGCTGCAC-CGGCTAAGAAAGCTGCACDesign primers
3733381GTGCTG-GTGCTG-CTGCTG-GCGCTGDesign primers
3796728GAGACCGAGGCCGAGATCGAGGCCDesign primers
3865268ATGGGTCATCAACCACCGGGTCATCGACCACCGGGTCATCAACCACTGGGTCATCAACCACTGGGTCTTCAACCTDesign primers
4173897CCA-GCA-CCA-CCA-GCA-GCA-TCA-GCADesign primers
4467295GACGCG-GATGCG-GATGCG-GATGCGDesign primers
4552955CCAGGGGCACCAGGAGCACCAGGGGCGCCAGGGGCADesign primers
4559598GTACAGCAGTAG-GTACAGCAGTAG-GTACAGCAGTAG-GTACAGCAGTAG-GTACAGCAGTAG-GTACAGCAGTAG-GTACAGCAGTAG-GTACAGCAGTAG-GTACAGCAGTAG-GTACAGCAGTGGDesign primers
4608162CGCGGTCGCGGGCGCTGTCGCGCTDesign primers
4701891CGGCGGCGGCGCTGGCGGCGGCGCDesign primers

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