Microsatellites /Tandem Repeats database

Genome: Methanococcoides burtonii DSM 6242

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
29457TATT-GATT-GATT-GATT-GATT-GATT-GATT-GATT-GATTDesign primers
61370TTCAATTCA-TTCAATTCA-TTCAATTCA-TTCAATTCADesign primers
207891ATTT-ATTT-ATTT-ATTT-ATTT-ATTTDesign primers
285655GAAT-GAAT-GAAT-GAAT-GAAT-GAATDesign primers
287537TGATA-TTATA-TTATA-TTATA-TTATA-TTATADesign primers
292347ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATA-ATADesign primers
297048AACTTACCAG-TACTTACCAG-TACTTACCAGDesign primers
321958TGTATTGC-TGTATTGC-TGTATTGC-TGTATTGCDesign primers
325356TTTAT-TATAT-TATAT-TATAT-TATAT-TATATDesign primers
473915TTTTCTCCCTAG-TTTTCTCCCTAG-TTTTCCCCCTAGDesign primers
480778ACGAAACTACAGTAATAA-ACGAAACTACAGTAATAA-ACGAAACTATAGTAATAADesign primers
503700AACTTGCGCGGT-AGCTTGCGCGGT-AGCTTGCGCGGT-AGCTTGCGCGGT-AGCTTGCGCGGTDesign primers
530375TTCTCATT-TTCTCATT-TTCTCATTDesign primers
713459ATCAGAAAA-ATCAGAAAA-ATCAGAAAADesign primers
1435695TAAC-TAAC-TAAC-TAAC-TAAC-TAAC-TAACDesign primers
1771011CGTCATCGACTACTTCGTCGTCATCGACTACTACGTCGTCATCGACTACTTCGTCGTCATCGACTACTACGTCGTCATCGACTACTACGTDesign primers
1861554CCAGGGAAACAAGATCACCTAGGGAAACAAGATCACCTAGGGAAACAAGATCACDesign primers
2247820AAGA-AAGA-AAGA-AAGA-AAGA-AAGADesign primers
2275235TGTAAATTATCTGTAAATTATTTATAAATTATCDesign primers
2326620ACAACCAATAAG-GCAACCAATAAG-GCAACCAATAAGDesign primers
2502868CAATTTAATAATG-CTATTTAATAATG-CTATTTAATAATG-CTATTTAATAATG-CTATTTAATAATG-CTATTTAATAATG-CTATTTAATAATGDesign primers

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