Microsatellites /Tandem Repeats database

Genome: Methanococcoides burtonii DSM 6242

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
29456GTAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGATDesign primers
46258GGTAAT-GGTAAT-GGCAAT-GGTAATDesign primers
61367TCGTTCAAT-TCATTCAAT-TCATTCAAT-TCATTCAATDesign primers
73044GAATAAATAAATAAATAAATAAACAAATAAACAAATDesign primers
207890AATT-TATT-TATT-TATT-TATT-TATTDesign primers
230722CAT-TAT-CAT-CAT-TAT-TAT-CAT-CATDesign primers
265591ATGACCTTGCGTGACCTTTCAAGACCTTCCDesign primers
285652AAAG-AATG-AATG-AATG-AATG-AATGDesign primers
287536TTGAT-ATTAT-ATTAT-ATTAT-ATTAT-ATTATDesign primers
292345TTA-TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAADesign primers
297047CAACTTACCA-GTACTTACCA-GTACTTACCADesign primers
300302ATAACAATAAGAATAATAATAAAADesign primers
321957TTGTATTG-CTGTATTG-CTGTATTG-CTGTATTGDesign primers
325355GTTTA-TTATA-TTATA-TTATA-TTATA-TTATADesign primers
335861TATCATAATCATTATGATTATTATDesign primers
369302GATTATTACATCATTATTACATTGTTATTACATDesign primers
473914ATTTTCTCCCTA-GTTTTCTCCCTA-GTTTTCCCCCTADesign primers
480774CTAGACGAAACTACAGTAATAAACGAAACTACAGTAATAAACGAAACTATAGTADesign primers
503699CAACTTGCGCGG-TAGCTTGCGCGG-TAGCTTGCGCGG-TAGCTTGCGCGG-TAGCTTGCGCGGDesign primers
520418GAAGGAAAG-GAAGGAAAG-GAAGAAAAGDesign primers
530373TATTCTCATTTTCTCATTTTCTCADesign primers
581959TGATATTAACAATGATATTAACTTTGATACTAAAAADesign primers
582150TC-AG-AC-AA-AA-AC-AT-AC-AA-AA-AC-AT-AC-AA-AADesign primers
589822ATTTCTTCTTATTTCTTGTATTTTCTTGTTDesign primers
590771ACATTTAAGTATAATTTTAAGTATGAATTTAAGTATDesign primers
601706AAACACACATAATACACACACAATACACACATTDesign primers
644473AACCATTATAG-CACCATTATAG-CACCAGTATAG-AACCAGTATAGDesign primers
713455AAACATCAGAAAAATCAGAAAAATCAGDesign primers
1001994TTCAACTTCAATTTTAACATCAACDesign primers
1166319AAG-AAG-AAA-AAG-AAT-AAG-AAA-AAGDesign primers
1313359ACAAATGTGTG-ACAAATGTGTG-ACAAAACTGTGDesign primers
1435694TTAA-CTAA-CTAA-CTAA-CTAA-CTAADesign primers
1626447CAGTAGTGG-AAGTAGTGG-AAGTAGTGGDesign primers
1641748GTATCCTCTTTTGTAGTGTTCTCCTTTGTAGTGTTCTCCTTTGTADesign primers
1645110CCGACCTGACCAACCTGACCGACCTGADesign primers
1771005CATCGCCGTCATCGACTACTTCGTCGTCATCGACTACTACGTCGTCATCGACTACTTCGTCGTCATCGACTACTACGTCGTCATCGACTADesign primers
1771096TACGTCATCATCGACTACTACGTCGTCATCGACTACTACGTCATCATCGACTACDesign primers
1861498GACTAGGGAACCAAGGAC-AACTAGGGAACCAAGGAC-AACCAGGGAAGCAAGGACDesign primers
1861553ACCAGGGAAACAAGATCA-CCTAGGGAAACAAGATCA-CCTAGGGAAACAAGATCADesign primers
2002657TATTTAATTTAATTTATTTTTATTCAATTCDesign primers
2003695TAATAGTTA-TAATAGTTA-TAAAAGTTADesign primers
2180336AAATAGAATAAAATAAACTAAAATGDesign primers
2180566TAAAATAGTATAAACTAATATAAAATAAAADesign primers
2247819GAAG-AAAG-AAAG-AAAG-AAAG-AAAGDesign primers
2275232ATATGTAAATTATCTGTAAATTATTTATAAATTATCTGTAAGTTDesign primers
2326619TACAACCAATAA-GGCAACCAATAA-GGCAACCAATAADesign primers
2335225CCATATCCGTATCCATACCCATATCCGTATDesign primers
2456345TGATATCTCATGCTATCTCATGCTATCTTATGATATCGCTDesign primers
2502866TCCAATTTAATAA-TGCTATTTAATAA-TGCTATTTAATAA-TGCTATTTAATAA-TGCTATTTAATAA-TGCTATTTAATAA-TGCTATTTAATAADesign primers

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