Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Sphingopyxis alaskensis RB2256

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
44144	GCGTCATCGTCAGCGCCAGCGTCG	Design primers
162837	GCG-GCG-TCG-GCG-GCG-TCG-GCG-GCG	Design primers
239665	GCGGCGGCGCGGCTGCGCGACGGC	Design primers
276704	GGCGCTGCGCGGCGAAGCGCCGCGC	Design primers
276802	CG-CG-CG-CG-CT-CG-CG-CG-CG-CG-CT-CG	Design primers
300980	TCCGCTCGGCGCCGCTTCGCGCCGC	Design primers
329020	TCGCGGTGATGGCGGTGATCGCGGCGA	Design primers
342275	CCGGGTTGGTGGCCTGGTTGGTGGCCTGGCTGGTGG	Design primers
358721	CCC-GCG-CCG-CCG-GCG-CCG-CCG-GCG-CCG	Design primers
376865	GGTCGCCGTCGCGGGCGCGGTCGA	Design primers
463034	GTCCATGCCGCCCATGCCGCCCATGCC	Design primers
468017	CCC-GCC-GCC-GCC-CCC-ACC-GCC-GCC	Design primers
531145	TCGGGGTCGAGGTCGGCGTCGCGG	Design primers
622441	CCGCGCCCGCTCCGGCGCCTGCGC	Design primers
625654	TTTCGGGCTTTCGGACTTTCAGGC	Design primers
730220	TGACGCCCCCGGTCGAGGTCGACACGCCGCCCGTCGAGGTCGACACGCCGCCGGTTGAGGTCG	Design primers
730304	AGACGCCGCCGGTTGAGGTGCTGACGCCCCCGGTGGATGTGCTGACGCCGCCGGTCGAGGTCGAGACGCCGCCGGTCGATGTCG	Design primers
814127	GGCGGCGCGGGTGGCGCGGGCGGCGTG	Design primers
814274	TCCGGCGGCGGCGGCGGCGGCGGCTCCTCCGGCGGC	Design primers
988159	GCGATGACCGCGATCACCGCGATCACC	Design primers
1081446	GGCGC-AGCGC-GGCGC-GGCGC-GGCGC	Design primers
1096217	CCG-ACG-ACG-ACG-CCG-TCG-GCG-ACG	Design primers
1172374	GAGCGCCGCGAGCGCCTCGATCGCCGC	Design primers
1298742	GCGCGATCAGGCCAAGCTCGACGAGGCCAAGCGCGAGCCCGCCAA	Design primers
1342583	TGC-CGA-AGC-TGC-TGC-TCC-GGC-CGA-CGC-CGC-TGC-TGC-TCC-GGC-TGC-GGA-CGC-TGC-TGC-TGC-CGC	Design primers
1357323	GCGATCATC-GCGATCATC-GCGATCAGC	Design primers
1392245	ACAGGCCCTCCCCCAGCCCCTCCCCCAGCCCCTCCC	Design primers
1465251	CTGCTGCATCTGTTGCATCTGCTGCAT	Design primers
1531692	CGCCCTCGCCTTCGCCCACGGCCT	Design primers
1583838	CAGCGCCGCCTGCGCCGCCAGCGTCGC	Design primers
1660352	ACCAGGATCAGGACCAGGACCAGT	Design primers
1692365	CCGCCAACGCCACAGCCACCGTCA	Design primers
1695985	CCCGCGACCGCCGCCGAGACCGCCCCCGAGACCGCC	Design primers
1709452	CGCTGCCGCTGATGCTGCCGCTGA	Design primers
1770838	GCGCC-CCGCC-GCGCC-GCGCC-GCGCC	Design primers
1785021	CCGCCGCCGCGGCCGACGACGCCG	Design primers
1855985	CGCGCCCGCGACGGCGCCCGCGCC	Design primers
1887692	CCGCGCGGCGGCGCGCAGCGTCGCGCCGCT	Design primers
1895517	CCGGCGTCGGCGACGGCGCGGGCG	Design primers
1972655	CGGCGCCGGTGCCGGTGCCGCCGC	Design primers
1991709	GTTCGGGATCGGGTTCGAGATCGG	Design primers
2027373	AGCCGCCGCCGCCCGCCGCCAGCGTCCGCC	Design primers
2028362	GCGGCGGCGGTGGCGGCGGCCGCG	Design primers
2097043	CCG-GCG-GCG-GCG-GCG-GAG-GCG-GCG-GGG-GCG-GCG-GGG-GCG-GCG-GGG-GCG-GCG-GAG-GCG-GCG	Design primers
2149275	TAGGCTCGGCA-GTGGCTCGGCA-GTGGCTCGGCA-GTGGCTCGGCA	Design primers
2243917	CGATGCCGCGGTCGACGCCGCAGTCGACGCCGCGGA	Design primers
2257315	CCC-CCG-CCG-CCC-CCG-CCA-CCG-CCG-CCG	Design primers
2269963	GTCCTCGCCCTCTTCCTCGGCCTC	Design primers
2434623	AGCGTGCCATCGCGTGCCATAGCGGGCGAT	Design primers
2503291	GGCCAGAAACGCCTGGGCCGAAAACACCTGGGCCGGAAACACCTG	Design primers
2514896	TGGCGATCGCGATGCCGATGGCGA	Design primers
2708198	CGTGGGCGTCGGCGCGGGCGTGGT	Design primers
2746462	TTATAATCGGATTATAATTCGATTATAATCGAG	Design primers
2859737	TCGTCGCCATTGTCGCCATCGTCGCCG	Design primers
2859768	TGTCGGTGTCGACGTCGGTGTCGT	Design primers
2872871	GGC-GGC-GGC-TGC-TGC-GGC-GGC-GGC	Design primers
2889459	CGGCGCGACCGGCCCGACCGGCGCGGC	Design primers
2927169	CGCGCAGCGCCTCGCCGCGACGCGG	Design primers
2971959	GGGCG-GCGCG-GGCCG-GGCCG-CGGCG	Design primers
3007847	CGGCGACCGCGACGGGGACGGCGA	Design primers
3038431	CACGCGGA-GACGCGGA-GACGCGGA	Design primers
3038551	CTCCGCGT-CTCCGCGT-CTCCGCCT	Design primers
3100135	GCCGCGCCGACCCGCGCCACGGCGC	Design primers
3101162	GCGCGGCGCCGGGGCGGCGCCTGCTCGCCGCCG	Design primers
3137251	CATCGGCTTCGGCGTCGGCATCGG	Design primers
3175881	CGCGCGCGCGCTCGCGGGCGCGCT	Design primers
3208094	CGCCTTCGTCGCCTTCGCTGCCTTCGT	Design primers
3237914	CGTGC-CGTGA-CGCGC-CGCGC-CGAGC	Design primers
3249581	GCCGACGCCCGCGCCGGCGACCGCGCCGATACCCGC	Design primers
3327026	CGCGGCGACCGCGGCGGCTGCGGCGAC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

44144

GCGTCATCGTCAGCGCCAGCGTCG