Microsatellites /Tandem Repeats database

Genome: Myxococcus xanthus DK 1622

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
31998GGCGGGGCCGGACGGGGCGCTGCGGDesign primers
39809AGAAGGAAGAAGCGAAGCGGAAGAAGGAGGAAGAGAAGCGACAGAAAGAAGAAGCGCGGCTGADesign primers
126291TTGGGCGTGGGCCTGGGCATGGGCDesign primers
187081GCCGGAGCCGCCGGTGCCGCCGGTGCCDesign primers
189904CAGGGCCAGCGCCAGGGCCAGCGCDesign primers
213137AGGGCGCGC-TGGGCGCGC-TGGGCGCGCDesign primers
330069GGAGGCGGGGGCGGAGGAGGCGGCDesign primers
386422GGCGGCGGCGGCGGTGGCGGCGGTDesign primers
410391GCTGGAGCTGGAGTT-GCTGGAGCTGGAGTT-GCTGGAGCCCGAGCTDesign primers
421622AGGTGCTGGCGGAGGTGAAGGCGGACGAGCTGGCGGDesign primers
433290CCGAGCCCGACGCGGGCACGGATG-CCGGTACGGACGCGGGCACGGATG-CCGGTACGGACGCGGGCACGGATG-CCGGTACGGACGCGGGCACGGATGDesign primers
444990CACCGCCACACCGTCACACAGCCADesign primers
475204GGTGGCGGTGGGGGTGACGGTGCCDesign primers
518791GAGGCGAAGGCGGAGGCCGACGCGDesign primers
545975GGGTGGGGGGCGGTGTGGTGCGGTGDesign primers
594989GAACGGACGGAACCTGAATGGCCGCAACCTGAATGGCCGCAACCTDesign primers
624080GAATCCGGACCCGGA-GAATCCGGACCCGGA-GAATCCGGACCCCGGDesign primers
628657CGCCTT-CGTCTT-CGTCTT-CGCCTTDesign primers
632335GTTGCCGCTGCCGTTGCCGTTGCADesign primers
665044CGCCGAGGAGAAGGCCGAGGAGACGGCCGAGGAAAADesign primers
755313CTCCGTCGCCGTCTCGGTCTCCGACTTCGTCTCCGTDesign primers
765038CCGAGAAACCCCGAAAGACCCCGAGGAAACDesign primers
789835GCCGCCCCCGCCGCCTCCGCCCCCGACGCCDesign primers
790272CAG-CAG-CAA-CAG-CAG-CAG-CAA-CAG-CAA-CAGDesign primers
794030GCGCCCAGGAGCACGCCCAGCAGCGCGCCCAGCAGCDesign primers
826115AGGGGGCGGCGAGGAGCCGGATGCCGGCAGTGGCGAGGAGCCGGATGCCGGCGGTGGCGAGGAGCCGGATGCTGGCAGTGGCGAGGAGCCGGATGCCGGCGGTGGCGAGGAGCCGGACGCDesign primers
839757CGCGTGTCCAGCGAGCGTGTCTCCAGCGAGCTTGTCTCCAGCGAGDesign primers
852340GCCAGCGCCAGTCCCAGCGCCAGCCCCAGCDesign primers
856129CGACATCTTCGGCGAGATTTTCGGCGACATCTTCGGDesign primers
864594CGCCGCCCG-CGCCGCCCG-CGCCGCCGGDesign primers
864852CGCCGCCACCGCCGCCGCCGCGGCDesign primers
865176CGCCGCCCGCGCCGCCTGCGCCGCCCADesign primers
867245CGGGGCGGGACGGCGGGGGGCGGCGDesign primers
886207GCGCGGGCGCGCGCCCGGGCGGGGDesign primers
918183AGCCGCCCCCGCCGCCCCCGCCGCCCCDesign primers
919459CTGGCGCTGGTGGTGGCGTTGGCGDesign primers
939188TGCTGGTGCGGGTGCAGGCGCTGGDesign primers
946789AGTGGACGG-TGTGGACGG-TGTGGACGGDesign primers
999157GGACTGCGCGGACCGCGCGGACTGCCCDesign primers
1064815TGCTGGCGCTGGTACTGGTGCTGCDesign primers
1116507GCACCA-GCACCA-GCAACA-CCACCADesign primers
1135727CCAGCGTCAGCGCCAGCCCCAACGDesign primers
1219660TGCTGGTGCCGGTGATGGCGCTGGDesign primers
1249818GCGGGGCCGCGGAGCCGCTGGGCCDesign primers
1381352GCGGGCCGGGGCGCGCCGGGGCGGGDesign primers
1398647CACGGC-CACGGC-CGCGGC-GACGGCDesign primers
1453234GCGGGGGCCTTGGCGGCCGCCTTGGCGGGGGCCTTCDesign primers
1479565TGGTGATGGTGGTGCTGATGGTGCDesign primers
1489904GGGGCCAGCGGCGTCCAGCGGGGACCAGCGDesign primers
1707203GCCGCCGACCACGCCGCCAATCACACCACCGACCACGCCACCGACGACGCCGCCGACCACDesign primers
1732169GCTGCGGCGACGAAGTCTGCGACGAAGAAGTCTGCGGCTGCGAAGDesign primers
1779226GGCGGCCGCGGCGGTGGCGGCCGCDesign primers
1909575GG-CG-CG-GG-AG-CG-GG-AG-CG-GG-AG-CGDesign primers
1933710TTAC-TCAC-TCAC-TCAC-TCAC-TCACDesign primers
2009589GCGGTGTCGGTGGCGGTCGCGGTGDesign primers
2072203GTACTCGTAGTCGTAGTCGTCCTCDesign primers
2103445AGAAGC-ACAAGC-ACAAGC-ACAAGCDesign primers
2122039TTGACGCAGCCTTGACGCACTCATGACGCAGCGDesign primers
2158152GC-GC-GT-GC-GT-GC-GT-GC-GT-GC-GT-GCDesign primers
2180243CCGCCTTCCTCGGTGCCGGCGTCCACGGTGCCGGCGTCCACGGTGDesign primers
2201264GTGGCAGTGGTGGCAATGGTGGCAGTGDesign primers
2257190GGCGCGGGCGCCTGCGCGGGCTCGDesign primers
2284523CGAACG-CGGACG-CGGACG-GGAACGDesign primers
2323917CGCCAAGGCCAACGCCGAGGCCAADesign primers
2376144TGGCGGAAGAAGCTCGCCTGGCTGAAGAGGCTCGGCTCGCCGAAGAGGCTCGCCTGGCTGAAGAAGCGCGCTTGGCTGAAGAAGCGCGCTTGGCTGAAGAGGCTCGACTGGCGGAAGAAGCGCGGCDesign primers
2376596GAAGAGCGTCGACTGGCGGAAGAGGCTCGACTGGCGGAAGAGGCTCGTCTGGCGGAAGAGGCTCGTCTGGCGGAAGAGGCTCGTCTGGCGDesign primers
2376712TCGACTGGCTGAAGAGGCTCGACTGGCGGAAGAGGCTCGTCTCGCGGAAGAGGCTCGACTCGCGGAAGAGGCDesign primers
2377439GAAGAGCGTCGACTGGCGGAAGAGGCTCGACTGGCGGAAGAGGCTCGTCTGGCGGAAGAGGCTCGTCTGGCGGAAGAGGCTCGTCTGGCGDesign primers
2377554GTCGACTGGCGGAAGAGGCTCGTCTCGCGGAAGAGGCTCGACTCGCGGAAGAGGCTCGACTCGCGGAAGAGGDesign primers
2379899CCCGCCGCCGCCCCGGCCCCCGCTDesign primers
2382490CCG-CCG-ACG-CCG-GCG-CCG-CCG-TCGDesign primers
2403646CTGGCGCAGGCGCTGCCGCTGGCGDesign primers
2417745GCGATGTCGATGGGGATGGCGAAGCCGATGDesign primers
2422246TCG-CCG-TCG-ACG-ACG-CCG-TCG-CCGDesign primers
2436443GCTCGG-CCCTGG-CCCTGG-CCCTGG-CCCTGG-CCCTGG-CCCTGG-CCCTGG-CCCTGGDesign primers
2474890TCCAGGGCGCTCCAGGGGGCCCCGGGGCGCDesign primers
2530356ATCTTCTGGCGGAACGCCCGCGTCATCTGGAGGGACGCCCGCGTCATCTGGCGGAACGCCCGAGTCTTCCGGCGGGACGCCCGADesign primers
2542386CCGGGG-CCGGGG-CCTGGG-CCTGGG-CCGGGG-CCGGGG-CCTGGG-CCTGGG-CCGGGG-CCGGGTDesign primers
2633680CGCAAGAGCCGTCGATGCCGCAGGAGCCATCGATGCCGCAGGACCCATCGATGCDesign primers
2645932CGCCGCCCACGCTGCCCACGCCGGCCADesign primers
2692447ACCACGAAGAAGAAGACGACGGCGAAGAAGACGACGGCGAAGAAGDesign primers
2692513GCGAAGAAGACGACGGCGAAGAAGGCAGCGGCCAAGAAGACCACCGCGAAGAAGGCCACCDesign primers
2777890CCGTGGCCGCGGGCGTGGCCGTGGDesign primers
2833220GCCAATGGGCTCGGAGCGGCCGATGGGTTCCGAGCGGCCAATGGGCTCGGAGCGGCCGATGGGTTCCGAGCGDesign primers
2847549GGGGCTGCGCCTGCTGGGGCGGCACCTGCCAAGGCTGCACCTGCTDesign primers
2860343GTGGCGGCGGCGGCGGCGGTGGTGDesign primers
2862735GTGGCGGCGGCGGCGGCGGTGGTGDesign primers
2866462GCTGGAGCCGGAGCTGGCGCAGGADesign primers
2870786TGGCGCTGGTGCTGGCGGTGGCCCDesign primers
2887104GTTGCTGCTGTTGCTGTTGTTGCTGCGDesign primers
2887253CGG-CGA-CGG-CGC-CGA-CGG-CGG-CGG-CGGDesign primers
2961835CGAGGACGACGACGACGATGAGGADesign primers
2963299GCG-CCG-CCG-CCG-CCG-CCG-CCG-CCGDesign primers
3018277GGGACTGGCGACGCGGGCACGGGTGACGCGGGTACGGGTGACGCGGGCACGGGTGACGCGDesign primers
3079479ACCGCT-CCCGCT-CCCGCT-CCCGCTDesign primers
3124031CACCATCGCCATCACCCTCACCACDesign primers
3185984GCGCTGGTGCTGGGGCTGGCCCTGDesign primers
3213368ACACGA-CCACGA-CCACGA-CCACGADesign primers
3278973GCCTTGGCTTCCGGGGCGGCCTTGGCCTCCGGGGCGGCCTTGGTCTCCGGCGCGDesign primers
3286809ACCGGAGCCCGAGCCGGAGCCTGAACCCGAGCCCCADesign primers
3336168AGGCGCGGGTGCAGGCGTGGGTCCAGGCGCGGCAGCDesign primers
3402624GCCGCTGGCGCTGCCGGTGACGCTGCCGCCDesign primers
3425114CGG-CGG-CGG-GGG-CGG-CGG-CGG-GGGDesign primers
3462950CCGCCGCTGCCGCCCCCGCCGCTGDesign primers
3500400ATGCCC-ATGCCC-GTGCCC-GTGCCCDesign primers
3504859GCCGGG-GCCGGG-GCCTGG-GCCGCGDesign primers
3524859AAGAAGGCCGCCGCCAAGAAGGCCGCCAAGAAGAAGCCTGCGGCCDesign primers
3699106GCCGCCGCGCCCGCCTCCACGCCCGTCGCCGTGCCCDesign primers
3739754GCCAAGGACAAGGCCACGGGCAAGDesign primers
3881289GGAGGCGGGGGCGGAGGAGGCGGCDesign primers
3960259CGGGGCCGGGTGGGGCGCGGCGCGGCGGCGDesign primers
3976461TGATCGCCGTGCTTGGCGTGCTCGCCGTGGCTGGCGTGCTCGCCGTGCTTGGCGDesign primers
4004142GCCTCCGCTTCCGCCTTCACCTCCDesign primers
4094342CGCCGCCGCCACGGCCGCCGCGGCDesign primers
4096488GGTCGT-CGTCGT-CCTCGT-CCTCGT-CGTAGT-CCTCCT-CGTCGT-CGACGT-CCTCGT-CCTCGT-CCTDesign primers
4096574TCG-TCC-TCG-TCG-TCT-TCC-TCG-TCG-TCG-TCGDesign primers
4425766TCCGCCTCCGACTCCACCTCCGCGDesign primers
4474674CGC-CGT-CCC-CGT-CGC-CGC-CGC-CGCDesign primers
4600386CGCCTGGCCCACCTTCGCCTGGAGCGCCTTCGCCTGGCCCGTCATDesign primers
4612284GGTGGCGGTGACGGTCGCGGTGGCDesign primers
4709119AC-GC-CG-CC-GA-CC-AC-GC-CA-CC-CA-CC-AC-CC-CG-CC-CA-CCDesign primers
4835107CCGGCA-CCGTCA-CCGTCA-CCGGCADesign primers
4835792GGTGCCGGCGTCGTCCTCACCGGTGCCCGCATCCTCTTCACCGGTGCCAGCGTCCACTTCACCGGTGCCGGCGTCGTCCTCGGTDesign primers
4885917CCCCCGCCACCGCCGCCAGCCCCGCCADesign primers
5057500TGGAGCTGGCGCTGGAGGTGGAGCDesign primers
5088743CGGCGGCGCCGGCCGCGGCGGCCGDesign primers
5103471GTC-CTC-ATC-CTC-CCC-GTC-CTC-GTC-GTC-GCC-CTC-CTC-ATC-GTC-CTCDesign primers
5166224GGCTCGACGCTCACGGGCTCGGCTCGCACGGGCTCGGCTCGCACGDesign primers
5193959GACGATGGCGACGATGCCGACGATGGGDesign primers
5210807CGTGGCCGTGCCCGTGGCCGCGGCDesign primers
5276880GCGCCAACGCCAGCTCCAGCGCCADesign primers
5389538CCGTGTGCGTGTCCGTGCCCGTGCDesign primers
5492044TCGGAGTCGGCGTCGGTGGCGGAGDesign primers
5519697GCGACCTTCTTCGCGGCCCCCTTCTTCGTGGCAGCCTTCTTCGCGDesign primers
5519798CGCCTTCTTCGCGGCGGACTTCTTCGTGGCAGCCTTCTTCGCGGCDesign primers
5519958GCAGCGGCCTTCTTGGCAGCGCCCTTCGCGCCCGCGGCCTTCTGGDesign primers
5766936AGCTCCAGCACCGGCTCCAGCTCCDesign primers
5861594GCGCCCGCTCCCGAGCCCGCGGCCDesign primers
5888012CGGATGTCCCGGATGTTCGGGATGTCCDesign primers
5889904CCTTCG-TCTTCG-CCTTCG-CCTTCGDesign primers
6000676CGGCCT-CCGCCT-CCGCCT-CCGCCTDesign primers
6127466GGCATGGGCGGTATGGGCGGTATGGGCDesign primers
6158316GCGTCCGTCGCGCCCGCATCCGTCACTCCCGCATCCGTCGCTCCCDesign primers
6158373CCCGCGTCCGCCTCTCCCGCGTCCGCCGCTCCCGCATCCGTCGCTDesign primers
6158432GCCCGCGTCCGCCGCTCCCCCGTCCGCCTCTCCCCCGTCCGCCTCDesign primers
6206220CGCCAGCTCCAGCGACAGCCCCAGDesign primers
6279115GCGGCGCAGCGGCGCGGCGGCGAADesign primers
6284465CGTCCAGGTCCACGTCGACGCCCADesign primers
6306101GGACGGGGACGACGACGGCGACGGDesign primers
6352823GACCGGGGT-GACCGGGGT-GACCGCGGTDesign primers
6394496GCCCTG-CCCCTG-GCCCTG-GCCCTGDesign primers
6481757CGCGCT-CGCGCT-CACGCT-CACGCTDesign primers
6483541GCCGCGGCCGCCGCCGAGGCCGAGDesign primers
6498346GAGGACGAGAAGGACGAGGACGACGAGDesign primers
6559015GACACTCGCACTCCCACTCGCACTCCCACTCGCACTDesign primers
6580366GTTCAGCCCGACGCGGGCATTGAGCCGGACGCGGGCATTGAGCCGGACGCGGGCDesign primers
6580475CCGACGCAGGCACTGAGCCGGACGCAGGCACTGAGCCGGACGCAGGCACTGAGCCCGACGCAGGTACCGAGCCCGACGCTGGCACAGAGCCCGACGCTGGCACAGAGCCCGACGCTGGCACAGAGCCCGACGCTGGCACCGAGCDesign primers
6580729GACGCTGGCACCGACCCCGACGCTGGCACCGACCCGGACGGGGGCACTGACCCCGACGCTGGCACCGACTCGDesign primers
6706620GCCGCG-GCCGCG-GCCTCG-GCCTCG-GCCTCGDesign primers
6714421GCCACCGCGCTACCGCGCTACCGCDesign primers
6777202ACGCCCGACGCGGGCGCCCCCGACGCCGGCAATCCGGACGCGGGCATCCCCGACGCGGGCDesign primers
6783645CGGGCACCGAGCCCGACGCGGGCACCGAGCCCGATGCGGGCACCGACCCCGAGCDesign primers
6795636CTTCGCCTTCTCCTTCGCCTCCGCDesign primers
6845426GCC-GCC-CCC-GCC-GCC-GCC-GCC-CCC-GCC-GCCDesign primers
6847674CATGCGCAGGCGCATGGGCTTGCGDesign primers
6864261GGAGCC-CGAGCC-CGAGCC-CGAGCC-CGAGCCDesign primers
6944820CACCACCACCGCCGCCACCACCATCCCCACDesign primers
6972029CCGCTGCGCTCCGCTGCGCTCCGCCDesign primers
7027694AGCAGCGGCAGCAGCGGCAGCAGGDesign primers
7036023GCCACGTCCACGCCCACGGCGACGDesign primers
7049677GGCGGCGTGGGCGGCGCGGGCGGCGAGDesign primers
7132621GCCCCAGCTCCTGCTCCAGCTCCTGCTCCAGCGCCTDesign primers
7329534GT-GG-GC-GT-CG-GC-GC-GG-GC-GA-GG-GCDesign primers
7443433CCCCGCCGCCCGCTCCACCGCCGCCCGCGCCGCCACCGCCCGCCCDesign primers
7479787CAGCGGGCCCCACGGAAGCGGCCCCCACGGAAGTGGCCCCCACGGDesign primers
7536712GGCGGCGCGCTCAGCCGCGATGGCGGCGCGCTCGGCGGCGATGGCGGCGCGCTCCTCCACGCTDesign primers
7556800AGCGCCAGCGCGAGCGGCAGCACCDesign primers
7561281GTCGTTCAACGGGCTGTCCTTCAATGGCCTGTCATTCAACGGCCTGTCCTTCAATGGCCTGTCATTCAACGGCCTGTCCTTCAATGGCCTDesign primers
7619928TCATGATGTCGTGATGTCACGATGDesign primers
7640210ACTCCCGACGCGGGCCCTACTCCGGATGCGGGCCCATTACCCGACGCGGGCCCTDesign primers
7646464CCAACGGCCAGCAGGCCAACGGCACGCAGGCAAACGGCACGCAGGDesign primers
7646520CAGCAGACAAACGGCACTGAGCAGGCCAACGGCACTGAGCAGGCCAACGGCACTDesign primers
7669451TGGCCG-TGGGCG-TGGGCG-TGGACGDesign primers
7716397CGCCCGCTCCCGAGCCCGCGCCCCDesign primers
7745416GA-AA-CG-CC-GG-AC-GC-GG-GG-GA-GG-AG-AC-GC-CT-GA-CG-CC-GG-TG-AG-GA-AA-CA-CC-GG-AC-GC-GG-GT-GA-AG-AA-GC-GC-CG-GA-CG-CG-GG-CG-AGDesign primers
7760600TGGGAGTCCCCGCGTCGGTGGGAGTCCCCGCGTCGCTGGGGGTGCCCGCGTCCGDesign primers
7760907GCCCACCTCGGCGGCGACGACGTCGGCGGCGCCCACGTCCGCGGGDesign primers
7812603ACGGCTACTGCTTCGGCTTCGGCTDesign primers
7856072TCCACCTCTTCGGCGAACGGGTCG-ATCTCCCCTTCGGCGAACGGGTCG-ACCTCCCCTTCGGCGAACGGGTCG-ACCTCCCCTTCGGCGAACGGGTCGDesign primers
7858561GGCCTC-GTCCTC-GTCCTC-GTCCTCDesign primers
7904731CCCTCCGCGCACCTCCGCGTCCAGCCGCGCDesign primers
8100035ACTCCGTGCCTGCGTCCGGCTCCGTACCTGCATCCGGCTCCGTGCCCGCGTCCGGCTCCGTGCCCGCGTCCGDesign primers
8118195CC-CG-CC-TC-CG-CC-CC-CT-CC-CC-CT-CCDesign primers
8142365CTGATCCTCATCCTGACCCAGATCDesign primers
8152305GGCCTTCTTCGCCGCCGCGGACTTCTTCGCCACCGCGGACTTCTTCGCGGGCGCDesign primers
8171080GCGGCTCCGTGCCCGCATCCGGCTCGGGCTCCGTGCCCGCGTCTGGCTCAGGCTCCGTGCCCGCGTCCGGCTDesign primers
8233662GCCCGCTCCGCCCGTAGTGCCCGAGCCGCCCGCAGTGCCCGAGCCGCCCGCAGTDesign primers
8235432TCGCCGCCGGCTTCGCCTTCCGTGCTGCCGACTTCGCCTTCCGTGCCGCCGGCTTCGCCTTCGDesign primers
8265692GGAGGTGCGACGGGCGGTGGCGCGACGGGCCGAGGTGCCCCGGGCDesign primers
8309703CGCCGACG-GGCCGACG-GGCCGACGDesign primers
8423227GGCTGGGGTTGGGGCTCGGGCTGADesign primers
8431152ACCCGAGC-GCCCGAGC-GCCCGAGCDesign primers
8490385TCCTTGACCTTGCCCTTGGCCTTGDesign primers
8498555GGAGAT-GGAGAT-GGAAAT-GGAGAGDesign primers
8506583CCGCGCCCCCCGCGCCCGTGCCCACCCCGCCCGCGCCGCCCGTGTDesign primers
8552105GAAACCATTCGTCGACAAGCCGTTCGTCGACAGTCCATTCGTCGADesign primers
8552157TTGGTGGACAGGCCGTTCGTCGACAAGCCGTTCGTCGACAGCCCGDesign primers
8566771CGCTGCTGCTGGCGCTGGTGCTGCCGTTGCTGATGGDesign primers
8606859GGACGACGACGACGACGATGACGADesign primers
8618263CGGCGGCGGCGGCGGCAGTGGCGGDesign primers
8682457GGACGCAGGCAGCGACGCGGGCAGTGATGCAGGCAGDesign primers
8693071GCGCCGTCGGGCCGTCGGGCCGTCDesign primers
8699464CGGAAAGCGGCGGCATGCGGCGGGAAGCGCDesign primers
8767216GCGGCGGCGACGGGGGCGCCGGCGDesign primers
8800395CGCCAC-CGGCAC-CGGCAC-CGCCACDesign primers
8840451GTGGGC-GTGGGC-GCGGGC-GTGGCCDesign primers
8858644GAAGCAGACCTTCAAGGCGCGGACCTTCAAGGCGCGGACCTTCAADesign primers
8881736CACGCGCATGCGCAGGCGCAGGCGDesign primers
8920019GCCGGCGGCGCTGGCGGCGCTGGCGGCDesign primers
8993105GCGG-GCGG-ACGG-GCGG-ACGG-GCGGDesign primers
9099915GCGAGGTGAGGTGAGGCGATGCGGGDesign primers
9131793GCG-GCG-GGG-GCG-GGG-GCG-GGG-GCGDesign primers

Please help us improve this resource by reporting problems, suggestions etc.