Microsatellites /Tandem Repeats database

Genome: Shewanella frigidimarina NCIMB 400

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
216193ATCGATTTTACTC-ATCGATTTTACTC-ATCGATTTTACTCDesign primers
548924TTTTTCTA-TTTTTCTA-TTTTTCTA-TTTTTCTA-TTTTTCTADesign primers
689210TTATTTTGA-TTATTTTGA-TTATTTTGADesign primers
880453ATTGCTGTCCTAAAA-ATTGCTGTCCTAAAA-ATTGCTGTCCTAAAADesign primers
1052811TTTGGTTT-TTTGGTTT-TTTGGTTT-TTTGGTTT-TTTGGTTT-TTTGGTTTDesign primers
1063338AAGTACAA-AAGTACAA-AAGTACAA-AAGTACAA-AAGTACAADesign primers
1161272TAGAGAA-TAGAGAA-TAGAGAA-TAGAGAA-TAGAGAADesign primers
1280631TAAAAATG-TAAAAATG-TAAAAATGDesign primers
1363346TAAGTGC-TAAGTGC-TAAGTGC-TAAGTGC-TAAGTGC-TAAGTGC-TAAGTGC-TAAGTGC-TAAGTGCDesign primers
1621057GCTTGTTACC-GCTTGTTACC-GCTTGTTACCDesign primers
1621088CTTGTAATCG-CTTGTAATCG-CTTGTAATCGDesign primers
1634130CTAGAAC-CTAGAAC-CTAGAAC-CTAGAAC-CTAGAAC-CTAGAAC-CTAGAAC-CTAGAAC-CTAGAACDesign primers
1719605AATGCCA-AATGCCA-AATGCCA-AATGCCA-AATGCCA-AATGCCA-AATGCCA-AATGCCA-AATGCCA-AATGCCADesign primers
1742564GATTTGTA-GATTTGTA-GATTTGTA-GATTTGTADesign primers
2028692CTGTTTG-CTGTTTG-CTGTTTG-CTGTTTGDesign primers
2170919ATGTTAA-ATGTTAA-ATGTTAA-ATGTTAA-ATGTTAA-ATGTTAA-ATGTTAADesign primers
2191962TCTAAGCA-TCTAAGCA-TCTAAGCA-TCTAAGCA-TCTAAGCA-TCTAAGCA-TCTAAGCA-TCTAAGCADesign primers
2353488TACATTAC-TACATTAC-TACATTAC-TACATTACDesign primers
2375343AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGTDesign primers
2993198TCTAACCTAGTAATG-TCTAACCTAGTAATG-TCTAACCTAGTAATG-TCTAACCTAGTAATGDesign primers
3028112TGCTAA-TGCTAA-TGCTAA-TGCTAADesign primers
3112851CAAGTGCAAGAA-CAAGTGCAAGAA-CAAGTGCAAGAA-CAAGTGCAAGAA-CAAGTGCAAGAA-CAAGTGCAAGAA-CAAGTGCAAGAADesign primers
3112977CAAGAACAAGTG-CAAGAACAAGTG-CAAGAACAAGTG-CAAGAACAAGTGDesign primers
3153039GTGCCAGCAGCA-GTGCCAGCAGCA-GTGCCAGCAGCA-GTGCCAGCAGCADesign primers
3260871TTGGATTGC-TTGGATTGC-TTGGATTGC-TTGGATTGC-TTGGATTGC-TTGGATTGC-TTGGATTGC-TTGGATTGC-TTGGATTGC-TTGGATTGCDesign primers
3391164ATCTAGTC-ATCTAGTC-ATCTAGTCDesign primers
3470836CATCTAG-CATCTAG-CATCTAG-CATCTAG-CATCTAG-CATCTAG-CATCTAGDesign primers
3507360TGTTACCGCTCTACTCGT-TGTTACCGCTCTACTCGT-TGTTACCGCTCTACTCGT-TGTTACCGCTCTACTCGT-TGTTACCGCTCTACTCGTDesign primers
3587441CGATATCAAG-CGATATCAAG-CGATATCAAG-CGATATCAAGDesign primers
3587504TATCAAGCGG-TATCAAGCGG-TATCAAGCGG-TATCAAGCGG-TATCAAGCGG-TATCAAGCGG-TATCAAGCGG-TATCAAGCGG-TATCAAGCGG-TATCAAGCGG-TATCAAGCGG-TATCAAGCGGDesign primers
3587625ATCAAGCGAT-ATCAAGCGAT-ATCAAGCGAT-ATCAAGCGATDesign primers
3621135TTTGTACT-TTTGTACT-TTTGTACT-TTTGTACTDesign primers
3636165TCTTATCGC-TCTTATCGC-TCTTATCGCDesign primers
3739876GCTCACTTATCTGAA-GCTCACTTATCTGAA-GCTCACTTATCTGAADesign primers
3786308GTTATGCTAAAA-GTTATGCTAAAA-GTTATGCTAAAADesign primers
3800440AGATGCA-AGATGCA-AGATGCA-AGATGCA-AGATGCA-AGATGCA-AGATGCADesign primers
3990511GAAGCT-GAAGCT-GAAGCT-GAAGCTDesign primers
4088532CTTTTTA-CTTTTTA-CTTTTTA-CTTTTTADesign primers
4247054ATTCAATACTCATATT-ATTCAATACTCATATT-ATTCAATACTCATATT-ATTCAATACTCATATTDesign primers
4408476TCTCTAT-TCTCTAT-TCTCTAT-TCTCTATDesign primers
4583631CGAAGAGCTAAAAG-CGAAGAGCTAAAAG-CGAAGAGCTAAAAG-CGAAGAGCTAAAAG-CGAAGAGCTAAAAG-CGAAGAGCTAAAAG-CGAAGAGCTAAAAG-CGAAGAGCTAAAAG-CGAAGAGCTAAAAG-CGAAGAGCTAAAAG-CGAAGAGCTAAAAG-CGAAGAGCTAAAAG-CGAAGAGCTAAAAG-CGAAGAGCTAAAAG-CGAAGAGCTAAAAG-CGAAGAGCTAAAAG-CGAAGAGCTAAAAG-CGAAGAGCTAAAAG-CGAAGAGCTAAAAG-CGAAGAGCTAAAAG-CGAAGAGCTAAAAG-CGAAGAGCTAAAAGDesign primers
4647368TATCTACA-TATCTACA-TATCTACA-TATCTACADesign primers

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