Microsatellites /Tandem Repeats database

Genome: Shewanella frigidimarina NCIMB 400

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
216192TATCGATTTTACT-CATCGATTTTACT-CATCGATTTTACTDesign primers
548924TTTTTCTA-TTTTTCTA-TTTTTCTA-TTTTTCTA-TTTTTCTADesign primers
689164TAATATTGTTGATT-TAATATTGTTGATT-TAATATTGTCGATTDesign primers
689210TTATTTTGA-TTATTTTGA-TTATTTTGADesign primers
880452CATTGCTGTCCTAAA-AATTGCTGTCCTAAA-AATTGCTGTCCTAAADesign primers
910867TTATTCATTAGGGCTTATTCGTTAGGGCCTATTCATTAGGGCDesign primers
1051649ATTAGTCACCACTAATAGTCACCACTAATAGTCACCACTDesign primers
1052809TCTTTGGT-TTTTTGGT-TTTTTGGT-TTTTTGGT-TTTTTGGT-TTTTTGGTDesign primers
1063338AAGTACAA-AAGTACAA-AAGTACAA-AAGTACAA-AAGTACAADesign primers
1161272TAGAGAA-TAGAGAA-TAGAGAA-TAGAGAA-TAGAGAADesign primers
1280631TAAAAATG-TAAAAATG-TAAAAATGDesign primers
1363337ACTAAGT-GTTAAGT-GCTAAGT-GCTAAGT-GCTAAGT-GCTAAGT-GCTAAGT-GCTAAGT-GCTAAGTDesign primers
1621056GGCTTGTTAC-CGCTTGTTAC-CGCTTGTTACDesign primers
1621087GCTTGTAATC-GCTTGTAATC-GCTTGTAATCDesign primers
1634127ATGCTAG-AACCTAG-AACCTAG-AACCTAG-AACCTAG-AACCTAG-AACCTAG-AACCTAG-AACCTAGDesign primers
1694890ATAAAGTTAGCAAG-ATAAAGTTAGCAAG-ACAAAGTTAGCAAG-ACAAAGTTAGCAAGDesign primers
1719603ATAATGC-CAAATGC-CAAATGC-CAAATGC-CAAATGC-CAAATGC-CAAATGC-CAAATGC-CAAATGCDesign primers
1742564GATTTGTA-GATTTGTA-GATTTGTA-GATTTGTADesign primers
1965789TGCTAAAAATAAG-AGCTAAAAATAAG-AGCTAAAAATAAGDesign primers
2028692CTGTTTG-CTGTTTG-CTGTTTG-CTGTTTGDesign primers
2148865AAATCTGAATTCAAATCTGAGTTCAAATCTGAGTTCDesign primers
2170918TATGTTA-AATGTTA-AATGTTA-AATGTTA-AATGTTA-AATGTTADesign primers
2191960ACTCTAAG-CATCTAAG-CATCTAAG-CATCTAAG-CATCTAAG-CATCTAAG-CATCTAAG-CATCTAAG-CATCTAAGDesign primers
2350657AGTTACCTATAGATGTTACCTATAGAAGTTACCGATAGADesign primers
2353488TACATTAC-TACATTAC-TACATTAC-TACATTACDesign primers
2375343AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGTDesign primers
2993193TAATATCTAACCTAG-TAATGTCTAACCTAG-TAATGTCTAACCTAG-TAATGTCTAACCTAGDesign primers
3028112TGCTAA-TGCTAA-TGCTAA-TGCTAADesign primers
3112845CAAGTGCAAGTGCAAGAACAAGTGCAAGAACAAGTGCAAGAACAAGTGCAAGAACAAGTGCAAGAACAAGTGCAAGAACAAGTGCAAGAACAAGTGCAAGTGCAAGTGCAAGAACAAGTGCAAGTGCAAGTGCAAGAACAAGTGCAAGAACAAGTGCAAGAACAAGTGDesign primers
3153037CTGTGCCAGCAG-CAGTGCCAGCAG-CAGTGCCAGCAG-CAGTGCCAGCAGDesign primers
3260870TTTGGATTG-CTTGGATTG-CTTGGATTG-CTTGGATTG-CTTGGATTG-CTTGGATTG-CTTGGATTG-CTTGGATTG-CTTGGATTG-CTTGGATTGDesign primers
3314269ATTAACATCGGAA-ATTAACATCGGAA-ATTAGCATCGGAADesign primers
3391164ATCTAGTC-ATCTAGTC-ATCTAGTCDesign primers
3399804TTGTTACCGC-TTGTTACCGC-TTGTTATCGC-TTGTTATCGCDesign primers
3470832CTATCAT-CTAGCAT-CTAGCAT-CTAGCAT-CTAGCAT-CTAGCAT-CTAGCAT-CTAGCATDesign primers
3507340GCTGTTACCGCTCTACTC-GCTGTTACCGCTCTACTC-GTTGTTACCGCTCTACTC-GTTGTTACCGCTCTACTC-GTTGTTACCGCTCTACTC-GTTGTTACCGCTCTACTC-GTTGTTACCGCTCTACTC-GCTGTTACCGCTCTACTCDesign primers
3555721GGTTCACGTAACTATGGTTAACGTAACTATGGTTAACGTAACTATDesign primers
3587438AAACGATATC-AAGCGATATC-AAGCGATATC-AAGCGATATCDesign primers
3587479AGCGGTATCA-AGCGGTATCA-AGCGATATCA-AGCGGTATCA-AGCGGTATCA-AGCGGTATCA-AGCGGTATCA-AGCGGTATCA-AGCGGTATCA-AGCGGTATCA-AGCGGTATCA-AGCGGTATCA-AGCGGTATCA-AGCGGTATCA-AGCGGTATCA-AGCGATATCA-AGCGATATCA-AGCGATATCA-AGCGATATCADesign primers
3621135TTTGTACT-TTTGTACT-TTTGTACT-TTTGTACTDesign primers
3636165TCTTATCGC-TCTTATCGC-TCTTATCGCDesign primers
3739875TGCTCACTTATCTGA-AGCTCACTTATCTGA-AGCTCACTTATCTGADesign primers
3786297TTATGCTAAACGTTATGCTAAAAGTTATGCTAAAAGDesign primers
3800439TAGATGC-AAGATGC-AAGATGC-AAGATGC-AAGATGC-AAGATGCDesign primers
3990511GAAGCT-GAAGCT-GAAGCT-GAAGCTDesign primers
4088532CTTTTTA-CTTTTTA-CTTTTTA-CTTTTTADesign primers
4247052TAATTCAATACTCATA-TTATTCAATACTCATA-TTATTCAATACTCATA-TTATTCAATACTCATADesign primers
4408476TCTCTAT-TCTCTAT-TCTCTAT-TCTCTATDesign primers
4434158CAGTGTTATTTCAACCAGTATTATTTCAACCAGTGTTATTTCAACDesign primers
4435253GTTAGCTTTAGTTTCTACGTTAGCTTTAGTATCTACGTTAGCTTTAGTATCTACDesign primers
4583629ACCGAAGAGCTAAA-AGCGAAGAGCTAAA-AGCGAAGAGCTAAA-AGCGAAGAGCTAAA-AGCGAAGAGCTAAA-AGCGAAGAGCTAAA-AGCGAAGAGCTAAA-AGCGAAGAGCTAAA-AGCGAAGAGCTAAA-AGCGAAGAGCTAAA-AGCGAAGAGCTAAA-AGCGAAGAGCTAAA-AGCGAAGAGCTAAA-AGCGAAGAGCTAAA-AGCGAAGAGCTAAA-AGCGAAGAGCTAAA-AGCGAAGAGCTAAA-AGCGAAGAGCTAAA-AGCGAAGAGCTAAA-AGCGAAGAGCTAAA-AGCGAAGAGCTAAA-AGCGAAGAGCTAAADesign primers
4647368TATCTACA-TATCTACA-TATCTACA-TATCTACADesign primers

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