Microsatellites /Tandem Repeats database

Genome: Shewanella frigidimarina NCIMB 400

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
53693CATTGAAGGTGTCGTTGAAGCTGTTATTGATGGTGTDesign primers
216191CTATCGATTTTAC-TCATCGATTTTAC-TCATCGATTTTACDesign primers
255703TTAGGTAGATCGTTTAGGTAGATAATTTAGATAGATCGTDesign primers
323522TGTTTAAG-TGTTTAAG-TGTTTATGDesign primers
346893GCAGCAGCACCAGCAGCGGCACCADesign primers
427706TT-AT-TT-TT-AT-TG-TT-AT-AT-TT-TT-TTDesign primers
463231TTTAGTTAGATACTATTTAGTTAGAGATTGTGTAGTTAGAGATTADesign primers
548920TTAGTTTT-TCTATTTT-TCTATTTT-TCTATTTT-TCTATTTT-TCTATTTTDesign primers
603766ATCCACTGTTCAGAATAAAACCACTCTTCATAATAAAACCACTGTGCAGAATAADesign primers
648468GCTAATGGTTATACTAATGCTTATACTAATAGTTATDesign primers
689163ATAATATTGTTGAT-TTAATATTGTTGAT-TTAATATTGTCGATDesign primers
689209GTTATTTTG-ATTATTTTG-ATTATTTTG-ATTATTTTGDesign primers
701561AATTAAGTTAAATTCAATCAAATTADesign primers
710611AACGCCAACAACGCCGACCACGCCAACDesign primers
743739TGCTTA-TTCTTA-TTCTTA-TTCTTADesign primers
853159CAATAACAATCACAATAACAACAADesign primers
856295TTAAAGATAAAGTTAAAATTAACGDesign primers
875241TTTACCAACATTGTTACCGACATTTTTATCGACATTDesign primers
880450GTCATTGCTGTCCTA-AAAATTGCTGTCCTA-AAAATTGCTGTCCTADesign primers
910866ATTATTCATTAGGGCTTATTCGTTAGGGCCTATTCATTAGGGDesign primers
933715CATTACTGTTGCAACCATTGCTGTTAAAACCATTGCTGTTACAAADesign primers
1051643ACCACCATTAGTCACCACTAATAGTCACCACTAATAGTCDesign primers
1052806TGCTCTTT-GGTTTTTT-GGTTTTTT-GGTTTTTT-GGTTTTTT-GGTTTTTTDesign primers
1054973AAAGTACAAAAGCACAAAAGTGCADesign primers
1063319CATAAGTA-AATAAGTA-AATAAGTA-CAAAAGTA-CAAAAGTA-CAAAAGTA-CAAAAGTADesign primers
1161271TTAGAGA-ATAGAGA-ATAGAGA-ATAGAGA-ATAGAGADesign primers
1280629ATTAAAAA-TGTAAAAA-TGTAAAAA-TGTAAAAC-TGTAAAAC-TGTAAAAADesign primers
1310626CTGTTAGGTATTTTCTGTTAGGTATGCTCTGTTGGGTATTGTDesign primers
1329675TTTCTCTTGAAGGCTTTTCTCTTGACTGTTTGTCTCTTGAAGGCCDesign primers
1359567TTGTAATTAATCCAAGTTACTATTAATCCAAGTTGTAATTAAGCCAAADesign primers
1363335AAACTAA-GTGTTAA-GTGCTAA-GTGCTAA-GTGCTAA-GTGCTAA-GTGCTAA-GTGCTAA-GTGCTAADesign primers
1434682GTTGGTAATTGTGTTGGCAGTTGTGTTGGTAATTGTDesign primers
1440160CTTAGTCGTAACTGCCTCAGTCGTAACTGCGTTAGCCGTAAATGCDesign primers
1444092CTTTTTCCACAATCTTTTCCACAACTTTTTCGACAGDesign primers
1457291TATTGGTATTAGTACTGGTATTCGDesign primers
1524086ACGATCACAAGCGATAACAAGCGATAACAADesign primers
1545933ATTGTTGAGTTAATCGTTGCGTTAATAGTTGAGTTADesign primers
1586944TTGTTTAATCTGCCCTTGTTTAATCAGCACCAGTTTAATCCGCCCDesign primers
1620693AGCGATAACAGGCGATGACAAGCGATAAAADesign primers
1621055AGGCTTGTTA-CCGCTTGTTA-CCGCTTGTTADesign primers
1621086CGCTTGTAAT-CGCTTGTAAT-CGCTTGTAAT-CGCTCGTTATDesign primers
1634125TCATGCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCTDesign primers
1694889AATAAAGTTAGCAA-GATAAAGTTAGCAA-GACAAAGTTAGCAA-GACAAAGTTAGCAADesign primers
1719601TTATAAT-GCCAAAT-GCCAAAT-GCCAAAT-GCCAAAT-GCCAAAT-GCCAAAT-GCCAAAT-GCCAAATDesign primers
1742562TTGATTTG-TAGATTTG-TAGATTTG-TAGATTTG-TAGATTTGDesign primers
1884086CTAATGTTAGTAAAGCTAGAGTTACTAAAGCTAGAGTTACTAAAGDesign primers
1892939ACTACCTGCAATAGCATTACTTGCAATAGTATTACCCGCAATAACDesign primers
1903242GCACTGTCAGCCATATA-ATACTGTCAGCCATATA-ATACTGTCAGCCAAATADesign primers
1920812AAGACAACAATAAGACCAGAATAAAACAAGAATAAGACCAGAATDesign primers
1925115CTAGGCACTAAGCACTATGCACTATGCADesign primers
1965788TTGCTAAAAATAA-GAGCTAAAAATAA-GAGCTAAAAATAADesign primers
1970433CTTTTAATTCTTTTCATTGTTTTAATTDesign primers
1973899TAAAGCAGAAGCAGAAGCTAAAGTTAAAGCAGAAGCTAAAGCTAAAGTAGAAGCDesign primers
1999794TTTTTTTTGTGTTTTTTTTATTTTADesign primers
2028691TCTGTTT-GCTGTTT-GCTGTTT-GCTGTTTDesign primers
2082190CAAGTTACTGCCTGCAAAAGATTAGTTAGTGCCTGCAAAAAACTAGTTAATGCCTGCAAAAGADesign primers
2114470TTTTAATATTAGTTTTGGATATTAGTTTTTGATAATAGTDesign primers
2148864TAAATCTGAATTCAAATCTGAGTTCAAATCTGAGTTDesign primers
2170916TCTATGT-TAAATGT-TAAATGT-TAAATGT-TAAATGT-TAAATGTDesign primers
2191904AAATTC-AACTTC-CAATTC-CAATTC-AACTTCDesign primers
2191956TCAAACTC-TAAGCATC-TAAGCATC-TAAGCATC-TAAGCATC-TAAGCATC-TAAGCATC-TAAGCATC-TAAGCATCDesign primers
2350656CAGTTACCTATAGATGTTACCTATAGAAGTTACCGATAGDesign primers
2353483ATTATTAC-ATTACTAC-ATTACTAC-ATTACTAC-ATTACTACDesign primers
2375342GAAATAAG-TAAATAAG-TAAATAAG-TAAATAAGDesign primers
2496960TGGTTATGTTATTGGTTATGGTATTGGTTATGGTGTDesign primers
2501984TTAATGTCATCGTTAACGTCATTGTTAACGTCATTGDesign primers
2518504AAACCCAAGTATTAAACCTTAGTATTAAGCCCGAGTATTDesign primers
2520981CCTGTGTAATCAAATCCTTTGCCATCAAATCCTTTGTCATCAAACDesign primers
2548270ATTACTCATCACTCATTACCCATTACTCDesign primers
2586553CTGTATTTGTGTTTACTGTTCTTGTATTTACTGCACTTGTGTTAACTGCACTTGTGTTAADesign primers
2712422ATGATTTTATAAACATGATCTTATAAACATAACTTTATAAACDesign primers
2748406ATAGCAATAACAATACCAAGAGCADesign primers
2943469GACTTATTTGAAATAGCCTGATTTGACATAGCCTGGTTTGAAATADesign primers
2944756ATATTGATGTGAATGTTGATGTTACTATTGATGTTADesign primers
2993191GCTAATATCTAACCT-AGTAATGTCTAACCT-AGTAATGTCTAACCT-AGTAATGTCTAACCT-AGTAATGTCTAACCTDesign primers
2996610AAACACCCAAACACTCAAACACCADesign primers
3024840AAGTTGTTTG-CAGTTGTTTG-CAGTTGTTAGDesign primers
3025091AAACCATAGCTAGAAATCATAGCTAGAAATCATAGCGAGTAACCATAGCGAGDesign primers
3028111TTGCTA-ATGCTA-ATGCTA-ATGCTA-ATGCTADesign primers
3112837AACAAG-AACAAG-TGCAAG-TGCAAG-AACAAG-TGCAAG-AACAAG-TGCAAG-AACAAG-TGCAAG-AACAAG-TGCAAG-AACAAG-TGCAAG-AACAAG-TGCAAG-AACAAG-TGCAAG-TGCAAG-TGCAAG-AACAAG-TGCAAG-TGCAAG-TGCAAG-AACAAG-TGCAAG-AACAAG-TGCAAG-AACAAG-TGCAAG-AACAAG-TGCAAGDesign primers
3153033GCAACTGTGCCA-GCAGCAGTGCCA-GCAGCAGTGCCA-GCAGCAGTGCCADesign primers
3260862TTAGATTTT-TTGGATTGC-TTGGATTGC-TTGGATTGC-TTGGATTGC-TTGGATTGC-TTGGATTGC-TTGGATTGC-TTGGATTGC-TTGGATTGCDesign primers
3314267ATATTAACATCGGAAATTAACATCGGAAATTAGCATCGGAAATTAGCATCGGDesign primers
3391163GATCTAGT-CATCTAGT-CATCTAGTDesign primers
3399798TATCGTTTGTTACCGCTTGTTACCGCTTGTTATCGCTTGTTATCGCTTATDesign primers
3434238AGCGGTAAAGAGTGGTAACGAGCGATAAAADesign primers
3470830AACTATC-ATCTAGC-ATCTAGC-ATCTAGC-ATCTAGC-ATCTAGC-ATCTAGC-ATCTAGCDesign primers
3507338CAGCTGTTACCGCTCTAC-TCGCTGTTACCGCTCTAC-TCGTTGTTACCGCTCTAC-TCGTTGTTACCGCTCTAC-TCGTTGTTACCGCTCTAC-TCGTTGTTACCGCTCTAC-TCGTTGTTACCGCTCTAC-TCGCTGTTACCGCTCTACDesign primers
3507483CGTTGTTATCGCTCTATT-CGTTGTTATCGCTCTATT-CGTTGTTATCCCTTTATTDesign primers
3555716ACTCAGGTTCACGTAACTATGGTTAACGTAACTATGGTTAACGTAACTATGGTTCACCTADesign primers
3559810ATCATTGTCAAAAATCATCGCCAAAAATCATTGCCAAAADesign primers
3587437AAAACGATAT-CAAGCGATAT-CAAGCGATAT-CAAGCGATATDesign primers
3587478AAGCGGTATC-AAGCGGTATC-AAGCGATATC-AAGCGGTATC-AAGCGGTATC-AAGCGGTATC-AAGCGGTATC-AAGCGGTATC-AAGCGGTATC-AAGCGGTATC-AAGCGGTATC-AAGCGGTATC-AAGCGGTATC-AAGCGGTATC-AAGCGGTATC-AAGCGATATC-AAGCGATATC-AAGCGATATC-AAGCGATATCDesign primers
3596340ACGATGATG-ACGATGATG-ACGACGATGDesign primers
3621134CTTTGTAC-TTTTGTAC-TTTTGTAC-TTTTGTACDesign primers
3636155TTCTTATCG-TTCTTATCG-CTCTTATCG-CTCTTATCGDesign primers
3693942ATCATCATCAAAATCTTCGTCAAAGTCATCATCATADesign primers
3710777AACATCACTCATAGCATCCCTCATAATATCTCTCATDesign primers
3739873ATTGCTCACTTATCT-GAAGCTCACTTATCT-GAAGCTCACTTATCTDesign primers
3740533CTTGTCTATTAACGAT-ACTGTCTATTAACGAT-ACTGCCTATTAACGATDesign primers
3755685TTAGCCTTAAATCATTGGCCCTAAATCATTAGCCATAAATAADesign primers
3786290CTAAACATTATGCTAAACGTTATGCTAAAAGTTATGCTAAAAGTTATGDesign primers
3800433AGATGTT-AGATGCA-AGATGCA-AGATGCA-AGATGCA-AGATGCA-AGATGCA-AGATGCADesign primers
3869596CAATAGATCGATAGATCGATAGATDesign primers
3990508GCAGAA-GCTGAA-GCTGAA-GCTGAADesign primers
3998627AGCTAATTCAGCAGCTAATTTAGCTTCTAATTCAGCDesign primers
4003380TTAGGCTTATCAGACTTTGGTTTGTCAGACTTAGGTTTATCAGACDesign primers
4048154AAAGCGATAAAAGCGGTAAAAGCGGTADesign primers
4052217CAATCAGTTTTAACACCATCAGCCTTAACACAATCTGTTTTTACADesign primers
4057995TCTAATGTAAAGCGCTAATGTAAAGCACTAATGTAAAACDesign primers
4088531TCTTTTT-ACTTTTT-ACTTTTT-ACTTTTTDesign primers
4107244ATTTAACTTTAATTTTAACTTTAADesign primers
4212986ATTATG-GTTATG-GTTATG-GTTATGDesign primers
4223036ATTAGATTTCTTTCAATTAACTTTTTTTCAATTAGATTTTTCTCADesign primers
4244958TAGTCTGACTAGTTTGACTAGTTTGACDesign primers
4247048CTTGTAATTCAATACT-CATATTATTCAATACT-CATATTATTCAATACT-CATATTATTCAATACTDesign primers
4264773ACGATTCACAAA-ACGATTCACAAA-ATGATTCACTAADesign primers
4298630GTAACAG-GTAACAA-GTAACTG-GTAACTG-GTAACTGDesign primers
4337233AAAAGACAAAAAAAGGCATAAAACGGCAAADesign primers
4339974CCGCCCATT-CCGCCCATT-CCACCCATT-CCGCCCATADesign primers
4408473TACTCTC-TATTCTC-TATTCTC-TATTCTCDesign primers
4434156TTCAGTGTTATTTCAACCAGTATTATTTCAACCAGTGTTATTTCADesign primers
4435238TGCTTTAGTGTCTATGTTAGCTTTAGTTTCTACGTTAGCTTTAGTATCTACGTTAGCTTTAGTATCTACGTTDesign primers
4442028GGGTTGAGGTTGGGGTTGGGGTTCDesign primers
4583626AAGACCGAAGAGCT-AAAAGCGAAGAGCT-AAAAGCGAAGAGCT-AAAAGCGAAGAGCT-AAAAGCGAAGAGCT-AAAAGCGAAGAGCT-AAAAGCGAAGAGCT-AAAAGCGAAGAGCT-AAAAGCGAAGAGCT-AAAAGCGAAGAGCT-AAAAGCGAAGAGCT-AAAAGCGAAGAGCT-AAAAGCGAAGAGCT-AAAAGCGAAGAGCT-AAAAGCGAAGAGCT-AAAAGCGAAGAGCT-AAAAGCGAAGAGCT-AAAAGCGAAGAGCT-AAAAGCGAAGAGCT-AAAAGCGAAGAGCT-AAAAGCGAAGAGCT-AAAAGCGAAGAGCTDesign primers
4589334GCAAAACTTTCCGCAGTTAAACTTTCCACAGCTTAACTTTCCGCADesign primers
4634361AATTGAACGGATAATTTGAACTGATAATTTGAACTGATADesign primers
4647367CTATCTAC-ATATCTAC-ATATCTAC-ATATCTAC-ATATCTACDesign primers
4673962TTTTTTGCCTATTTTTTGTCTATTCCTTGCCTADesign primers

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