Microsatellites /Tandem Repeats database

Genome: Escherichia coli APEC O1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
77258GCAGCAACAGCAGCAGCGCCAGCADesign primers
296180ATAAATAGCTATAAATACATCTAAATACCTDesign primers
297330AATACTATAATTA-AATACTATAATTA-AATAATATAAATADesign primers
297384TATAGGTCACTGTGAGCTAGGGGGTAGGTCATAGTGAGCTAGGGGGTAGGTCATAGTGAGCTAGGGDesign primers
466398TCCATGCCTTCCATACCTTCCATACCTDesign primers
556576ATATCAATACCAATATCCATTTCADesign primers
742453AGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGDesign primers
1476484CAGAGG-AAGAGG-AAGAGG-AAGAGGDesign primers
1908668CGGGATCGGCATCGGCATCGGGTTDesign primers
2009320ACC-AGC-ACC-ACC-AGC-AGC-ACC-ACCDesign primers
2081964TTCTTGATCTGTATCTTTATCTGTATCTTTATCTGTDesign primers
2280902CGTTTAATGCCTTATAATGCCTTTTAGTGCDesign primers
2421757TTATATGCCTTTATTTGCTTTTTTATGCCADesign primers
2572261AAACGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAGDesign primers
2948444ATTTTGACGGGGCAGATTTTGATGCGTCAGATTTTGACGGGTCAGDesign primers
3072248ACAGGC-GCAGGC-GCAGGC-GCAGGCDesign primers
3111770GTTGTGATGTTGTGTTGTTGTGTTDesign primers
3324746AAAGCAAAC-ACAGCAAAC-ACAGCAAAC-ACAGCAAACDesign primers
3435583CCTTTGCTTTCTTTTCCTTGCGTTTDesign primers
3599560TGCACGACCAGCACGACCTGCACGACCDesign primers
3768784GTCGTG-GTCGTG-ATCGTG-GTGGTG-ATCGTGDesign primers
3787740TT-TT-TG-TT-TT-AT-TT-TT-TG-TT-TT-TA-TT-TT-TTDesign primers
3853029TTATTTTT-GTATTTTT-GTATTTTTDesign primers
4280713CGGTGC-AGGTGC-AGGTGC-AGGTGCDesign primers
4409174AATGCCAATGGCGATGCCAATTCCDesign primers
4661872ATGCAAATGAAACTGCAAATGCAGDesign primers
4735663CATTCGCTACCTTCGCTACCTTCGCTADesign primers
4746938AACCTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCT-GAGGTTGCTDesign primers
4780471ATGGGCGGCATGGGTGGCATGGGCGGCDesign primers
5059421AAGCGGCGAAAGCGGTGAAAGCGGCAADesign primers
5061690AATCTATTCAAGTATCTATTCACGAATCTATTCATTDesign primers

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