Microsatellites /Tandem Repeats database

Genome: Aeromonas hydrophila subsp. hydrophila ATCC 7966

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
12855CGCTGCTCGCCGCTGCTGACCCCGGCTCGCDesign primers
73538GCCTCATCGCCAGCATCATCGCCGGCCTGCTCGCCADesign primers
244119TTAGTT-GTGGTT-GTGGTT-GTGGTT-GTGGTT-GTGGTTDesign primers
349136GATACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCC-TCAACTGCCDesign primers
361001GCCAGCACCAGCGCCATCACCAGCDesign primers
403845TTTGTGGTTCAGCGTGGTGGTTCAGCGTGGTGGTTCAGCDesign primers
518425ACCTTGC-TGCTTGC-TGCTTGC-TGCTTGC-TGCTTGC-TGCTTGC-TGCTTGC-TGCTTGCDesign primers
551962GTTAAAAT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCT-GATTACCTDesign primers
640920AGCAGCACCAGCACCAGCAGCCGCDesign primers
651147TGGCCTTGGCTTCGGCCTGGGCCTDesign primers
727512CAGTTCCTGTTCCAGTTCCCGTTCDesign primers
856813GCTTCGGCTTCCGCTGCGGCTTCCDesign primers
925908GACATGGGCGGCATGGGCGGCATGGGCDesign primers
1033048CCCTGGCCA-CCATCGGCA-CCATCGGCA-CCATCGGCA-CCATCGGCA-CCATCGGCA-CCATCGGCA-CCATCGGCA-CCATCGGCA-CCATCGGCA-CCATCGGCA-CCATCGGCADesign primers
1033162GCACCATCGATACCGTCAGCGCCATCAATACCATCAGCACCATCCATGCCGTCGDesign primers
1049886CCGCCTGCTCTGCCTGCTCAGCCTGCTDesign primers
1081880CCACGACCATGATCACGACCACGGDesign primers
1081936ATCACGGCCACGATCACGGTCATGACCACGGCGACGACCACGGTCACGDesign primers
1092166CCAGCAGGCCGCCGAGCAGGCCGCCCATCATGCCGCDesign primers
1312899CTTGGCCTGGGCCTGGGCCTTGGTDesign primers
1326193GCAGCACCAGCAGCATCAGCGGCADesign primers
1448465GCCGCCGCCGACGGCGCCGCAGCCDesign primers
1506352CAAGATGAAGATCCAGATCCAGATDesign primers
1584439AGTACCTGT-GTTGCCTGT-GTTGCCTGT-GTTGCCTGT-GTTGCCTGT-GTTGCCTGT-GTTGCCTGT-GTTGCCTGTDesign primers
1605412TCAATGGG-TCAATGGG-TCACTGGGDesign primers
1743381TGGCGCTGCCGCTGGTGCTGCCGCDesign primers
1778028CGAGCTGATCGAGCTGTTCAAGCTGATDesign primers
1784415CCGGCCCAGCCGACCCAGCCGACCCAGDesign primers
1921542AGACCATGACCAACACCAAGACCADesign primers
1980614AGCAGCAACAGCAGCAGCGGCAGCDesign primers
1989879CTGTCG-ATGTCG-ATGTCG-ATGTCG-ATGTCGDesign primers
2091917GATGACGATGATGGTGACGATGTCDesign primers
2137187CGGAGCAAACAAAGAGCAAACAAGGATCAAACADesign primers
2237027TGGTGGAGGTGGAGGTGGTGGTGTDesign primers
2241302CAT-CAT-TAT-CAT-TAT-CAT-TAT-CATDesign primers
2258700TAGCCTACAAGGACT-GAACCTAAAAGGACT-TAACCTAAAAGGACT-TAACCTAAAAGGACTDesign primers
2264431GCTGCTCCTGCTGCTGTTGCCGCTDesign primers
2594993ACCGGCCAGGAAACCGGCCACGATACCGCCAAGGAADesign primers
2662687CCGGCCA-TCGGCCA-TCGGCCA-TCGGCCADesign primers
2662716CAAGGCTG-CAAGGCTG-CAAGGCTG-CAAGGCTG-CAAGGCTG-CAAGGCTG-CAAGGCTG-CAAGGCTG-CAAGGCTG-CAAGGCTG-CAAGGCTG-CAAGGCTG-CAAGGCTG-CAAGGCTG-CAAGGCTG-CAAGGCTG-CAAGGCTG-CAAGGCTG-CAAGGCTG-CAAGGCTG-CAAGGCTG-CAAGGCTGDesign primers
2681540CACAGTT-GGCAGTT-GGCAGTT-GGCAGTT-GGCAGTT-GGCAGTTDesign primers
2738618AGAGAAGTGGAGAGAGAAGTAAAGAGACAAGTGCAGDesign primers
2800482GATCATGAGCATCATCATGAACATDesign primers
2800783GCCATG-ACCATG-ACCATG-ACCATG-ACCATGDesign primers
2822520ACGCCA-ACGACA-ACGACA-GCGCCADesign primers
2842475TCGCCATCGCCGCCGCCATCGGCADesign primers
2876475CATCACCAACATCAGCAACATCTCCAADesign primers
2916633GCGGCCAAGGTTGAAGCCAAGGTTGAAGCCAAGGTTDesign primers
2930253CCACCGCCACCACCAGCGCCACCCDesign primers
2962171CTGGCGCTGGCCCTGGTGCTGGCCDesign primers
3049597CTTGGCCTCGGCCATGGCCTGGGCDesign primers
3238546ATTGAAAAAATGAAAAAATGAAAADesign primers
3255216TTTTTCTTTTTTTTCTTTTCGTTTTDesign primers
3281072TCTTCCCCTTCCTCTTCATCTTCCDesign primers
3366779CCACCAGCACCACGACCACCAGCADesign primers
3388571GCTCTGGCTCTAACTCTGGCTTTGDesign primers
3393797CCGTATCCGCTCCAGCCGTGTCCGCCCCATCCGTGTCCACCCCAGDesign primers
3441102CTGGTGATGGTGCTGGCGCTGGTGDesign primers
3451696CACGGTCAGGGTCACGGCCACGATDesign primers
3465864TGTTTCCGGCACAGGTTCCGGCACTGTTTCCAGCATDesign primers
3484131ACCAGCAGCAGCACCGGCAGCAGCDesign primers
3611243GCTGGCGGC-ACTGGCGGC-ACTGGCGGCDesign primers
3892666CAACGG-CAACGG-CAACCG-CAACGADesign primers
3924360CGGTGATGGTGATGGTGACGGTGTDesign primers
3924996CGGTGATGGTGATGGTGACGGTGTDesign primers
3927222CGGTGATGGTGATGGTGACGGTGTDesign primers
3927540CGGTGATGGTGATGGTGACGGTGTDesign primers
3927858CGGTGATGGTGATGGTGACGGTGTDesign primers
3928494CGGTGATGGTGATGGTGACGGTGTDesign primers
4002883AA-AA-GA-AA-AT-GA-AA-AA-CA-CA-AA-GADesign primers
4073519TTCTCGGCCTCCGCCTTGGCTTTCTTGTCCGCTTCGGCCTTGGCTTTCTTCTCAGCCTCCTGCTTGGCCTTCDesign primers
4166966CTGGCGGTGGCGCTGGCACTGGCCDesign primers
4203772GGCAGTGAAGACGCAGCGAAGAAGCAGTGCAGADesign primers
4382628CGTTTTCCTTTTAGTTTTCGTTTTDesign primers
4579684TAAA-CAGA-CAGA-GAGA-CAGA-GAGA-CAGA-GAGA-CAGA-GAGA-CAGA-GAGA-CAGA-GAGA-CAGA-GAGADesign primers

Please help us improve this resource by reporting problems, suggestions etc.