Microsatellites /Tandem Repeats database

Genome: Prochlorococcus marinus str. MIT 9515

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
11855ATTAAAACAGAAACA-AGAAGAACAGAAACA-AGAAGAACAGAAACA-AGAAGAACAGAAACA-ACAAGAACAGAAACA-ACAAGAACAGAAACA-ACAAGAACAGAAACA-ACAAGAACAGAAACADesign primers
16281GGCGGCGGCGGTAGAGGCGGCGGTTACGGCGGCGGTDesign primers
27182AATTAA-AATTAA-AAATAA-AAGTAADesign primers
98864CCAATT-GCAATT-GCAATT-GCAATTDesign primers
107018TTTTTTAAATTTTTCGAAATTTTTTGAATTDesign primers
150448CTGCAAGTAATGTTGCAGGTAATGTTGCAGGTAATGDesign primers
163526AAGAACAACAACATGAAGAAGAACAACAACATGAAGAAGAACATGDesign primers
208162GATAAATAAATAAATATATAAATADesign primers
294931ATTTTAAACTTTTTTAAAGTATTTTTAATTDesign primers
298447TGAAAA-TGAAAA-TGAAGA-TGAAAADesign primers
326209TTTATTTATATTTTTTTTATTATTDesign primers
354720ATTTATAAATCTATAAATTTATAADesign primers
373384AAAAATAAAAAACTAAAAAAATGADesign primers
447704AAAAAAAT-AAAAAAAT-TAAAAAATDesign primers
460837AAAATAAAATTAATAATAAAGATADesign primers
460975CATCATACCAGGCATACCCATGCC-TCCCATGCCAGGCATACCCATGCC-GCCCATGCCAGGCATACCCATGCC-GCCCATACCAGGCATACCCATGCC-TCCCATGCCAGGCATACCCATGCCDesign primers
485334ACTTTTTTTTTATTTTTTTTACTTTATTTGDesign primers
492196ATTACTATTACCATTGCTATTTCTDesign primers
494539TTAAATCATGAGAATGGGAAG-AGTGATCATGAGAATGGGAAG-AGTGATCATGAGAATGGGAAGDesign primers
573586GTAATAATTAATTAATATTTAATTAATAATTATDesign primers
623539TTAATTAATTTTGTTTAATTATTATTAATTDesign primers
632475TCTAATTCCAATGCTAATTCTATTDesign primers
633867AATTATAAAATTTTAAAGTTATAADesign primers
648199ACA-TCA-TCA-TCA-TCA-TCA-TCA-TCADesign primers
653970AAAATTAAGAAAAATAAAAACAAATTAATADesign primers
654947CCATT-AAATT-AAATT-AAATT-AAATT-AAATTDesign primers
655533ATTTATTTATTTATTGATTTTTTTDesign primers
685919AATTAAATTTAATTGAATCTAATAATATTTDesign primers
718546TAAAAAATTAATAAATTAAAAATTDesign primers
756121TAAAATTAAAACAAAAATTAAAATDesign primers
778344TATTTTTAATTTTTTATTTATTCTTTTTDesign primers
793338ATTGTT-TTTGTT-TTTGTT-TTTGTT-TTTGTTDesign primers
946064AAATATATATATAAATAAAAATATDesign primers
969256TTTATTTTTTTTTATTATATTTTGTDesign primers
976183TCATATAAT-TACTTTAAT-TACTTTAAT-TACTTTAAT-TACTTTAAT-TACTTTAATDesign primers
1055506AAAAATTCTTAAAAATATTTATATATTCTTDesign primers
1074394ATTTAGTGGACAAATAGTGGACAAATAGTGGACDesign primers
1090742TT-TC-TT-TT-TA-TT-TT-TC-TT-TT-TT-TTDesign primers
1126967TTTTTAATAATGATTAATAAATTTTAAAAADesign primers
1150860TTTTTCTTCTTTTCTTTTTTTTTTDesign primers
1167849TATCTTTATCCTTATCTTTACCTTDesign primers
1168083TA-AA-TA-TA-AA-GA-TA-AA-AA-AA-AA-TADesign primers
1169534TTTTAATTCTAATTTTATCTTTAADesign primers
1194218AAAAAAGAAACAAAAAAAACTAAAADesign primers
1195039TTTATAAATTTTGAAAAATTTTTTTTAATTDesign primers
1208790AATAAAAATAAGAAGAAAAATTAAAATAAADesign primers
1211235AT-TT-TT-AT-AT-TT-GT-TT-TT-AT-TT-TTDesign primers
1232143TATAAAAATAAAAAAAAATATGTAAATATADesign primers
1280522TCCCTCCTCCCATTCCGG-GCATTCCTCCCATTCCGG-GCATTCCTCCCATTCCGG-GCATTCCTCCCATTCCGG-GCATTCCTCCCATTCCGG-GCATTCCTCCCATTCCGGDesign primers
1368881GTTTTTAC-TTTTTTAC-TTTTTTACDesign primers
1375407TATTTAAAGTTATATAAAGGTTTTTAAACTDesign primers
1376364AAAAATATTCATAAATGTTCAAAAATTTACDesign primers
1382594TTTGATTTGTTTGGATTTAATTTCADesign primers
1467630AAAAAAGCTTCAAAAAGCTTTAAAAAGCGTDesign primers
1472496GAAAATAAAAATGGAAATGAAAAADesign primers
1476460ATTTATTAATTATTATATATTAATTATTDesign primers
1526667AAAATAGAAATAGAAATAGAAATAAAAGTADesign primers
1534570ATTGTT-TTTGTT-TTTGTT-TTTGTT-TTTGTTDesign primers
1540524AAATTAATATTAAAAATAAAATAADesign primers
1633578TAACAAAATCAACTACAAAATCAAAGACAAAATCAADesign primers
1703216CTTCTGCTGCTGCTGCTGCTTATGDesign primers

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