Microsatellites /Tandem Repeats database

Genome: Methanoculleus marisnigri JR1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
162900GTAAGGTGCTTGGGGTGGATCA-GTAAGGTGCTTGGGGTGGATCA-GTAAGGTGCTTGGGGTGGATCA-GTAAGGTGCTTGGGGTGGATCA-GTAAGGTGCTTGGGGTGGATCA-GTAAGGTGCTTGGGGTGGATCA-GTAAGGTGCTTGGGGTGGATCADesign primers
546957TTACGAACCATCGCG-TTACGAACCATCGCG-TTACGAACCATCGCG-TTACGAACCATCGCG-TTACGAACCATCGCG-TTACGAACCATCGCG-TTACGAACCATCGCGDesign primers
636075ATCGTTCATTC-ATCGTTCATTC-ATCGTTCATTC-ATCGTTCATTC-ATCGTTCATTC-ATCGTTCATTC-ATCGTTCATTC-ATCGTTCATTC-ATCGTTCATTC-ATCGTTCATTC-ATCGTTCATTC-ATCGTTCATTC-ATCGTTCATTC-ATCGTTCATTC-ATCGTTCATTC-ATCGTTCATTCDesign primers
845095TTTTCTCCGAAC-TTTTCTCCGAAC-TTTTCTCCGAACDesign primers
1180455ACGGTGAACGTTACGCCGAGTCCG-ACGGTGAACGTTACGCCGAGTCCG-ACGGTGAACGTTACGCCGAGTCCGDesign primers
1180548CCGACGGTGAACGTTACGCCGAGT-CCGACGGTGAACGTTACGCCGAGT-CCGACGGTGAACGTTACGCCGAGTDesign primers
1181237TCCGACGGTGAACGTTACGCCGAC-TCCGACGGTGAACGTTACGCCGAC-TCCGACGGTGAACGTTACGCCGACDesign primers
1187209GACCCCGATGGAAACGGA-GACCCCGATGGAAACGGA-GACCCCGATGGAAACGGA-GACCCCGATGGAAACGGA-GACCCCGATGGAAACGGA-GACCCCGATGGAAACGGA-GACCCCGATGGAAACGGA-GACCCCGATGGAAACGGA-GACCCCGATGGAAACGGADesign primers
1248388TCTCCCCGA-TCTCCCCGA-TCTCCCCGADesign primers
1281091CTTCGCGT-CTTCGCGT-CTTCGCGTDesign primers
1543483CGAGATA-CGAGATA-CGAGATA-CGAGATA-CGAGATADesign primers
1905103GTAACCCCAACC-GTAACCCCAACC-GTAACCCCAACC-GTAACCCCAACCDesign primers
2334708GCCCATGCC-GCCCATGCC-GCCCATGCCDesign primers
2432659TCGGCGTCCACAACGAGG-TCGGCGTCCACAACGAGG-TCGGCGTCCACAACGAGGDesign primers

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