This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Percentaje of mismatches allowed within the tandem repeats:
0 |
0.1 |
0.2
| Position | Sequence | |
| 162897 | ACTGTAAGGTGCTTGGGGTGGA-TCAGTAAGGTGCTTGGGGTGGA-TCAGTAAGGTGCTTGGGGTGGA-TCAGTAAGGTGCTTGGGGTGGA-TCAGTAAGGTGCTTGGGGTGGA-TCAGTAAGGTGCTTGGGGTGGA-TCAGTAAGGTGCTTGGGGTGGA | Design primers |
| 400815 | ATTGTATCAAATTGCATCAAATTATATCAA | Design primers |
| 546956 | CTTACGAACCATCGC-GTTACGAACCATCGC-GTTACGAACCATCGC-GTTACGAACCATCGC-GTTACGAACCATCGC-GTTACGAACCATCGC-GTTACGAACCATCGC | Design primers |
| 636073 | GTATCGTTCAT-TCATCGTTCAT-TCATCGTTCAT-TCATCGTTCAT-TCATCGTTCAT-TCATCGTTCAT-TCATCGTTCAT-TCATCGTTCAT-TCATCGTTCAT-TCATCGTTCAT-TCATCGTTCAT-TCATCGTTCAT-TCATCGTTCAT-TCATCGTTCAT-TCATCGTTCAT-TCATCGTTCAT | Design primers |
| 845094 | ATTTTCTCCGAA-CTTTTCTCCGAA-CTTTTCTCCGAA | Design primers |
| 1180451 | CCCAACGGTGAACGTTACGCCGAGTCCGACGGTGAACGTTACGCCGAGTCCGACGGTGAACGTTACGCCGAG | Design primers |
| 1180524 | CCGACGGTGAACGTTACGCCGACACCGACGGTGAACGTTACGCCGAGTCCGACGGTGAACGTTACGCCGAGTCCGACGGTGAACGTTACGCCGAGTCCGACGGTGAACGTTACGCCGACACCGACGGTGAACGTCACGCCGACA | Design primers |
| 1181214 | CCAACGGTGAACGTTACGCCGAGTCCGACGGTGAACGTTACGCCGACTCCGACGGTGAACGTTACGCCGACT | Design primers |
| 1181287 | CGACGGTGAACGTTACGCCGACACCAACGGTGAACGTTACGCCGACTCCGACGGTGAACGTTACGCCGACTC | Design primers |
| 1187207 | GGGACCCCGATGGAAACG-GAGACCCCGATGGAAACG-GAGACCCCGATGGAAACG-GAGACCCCGATGGAAACG-GAGACCCCGATGGAAACG-GAGACCCCGATGGAAACG-GAGACCCCGATGGAAACG-GAGACCCCGATGGAAACG-GAGACCCCGATGGAAACG | Design primers |
| 1248388 | TCTCCCCGA-TCTCCCCGA-TCTCCCCGA | Design primers |
| 1281091 | CTTCGCGT-CTTCGCGT-CTTCGCGT | Design primers |
| 1543481 | TCCGAGA-TACGAGA-TACGAGA-TACGAGA-TACGAGA-TACGAGA | Design primers |
| 1905081 | AACCCCAACCGT-AACCCCAACTGT-AACCCCAACCGT-AACCCCAACCGT-AACCCCAACCGT | Design primers |
| 2334708 | GCCCATGCC-GCCCATGCC-GCCCATGCC | Design primers |
| 2432658 | TTCGGCGTCCACAACGAG-GTCGGCGTCCACAACGAG-GTCGGCGTCCACAACGAG | Design primers |
|
Please help us improve this resource by reporting problems, suggestions etc.