Microsatellites /Tandem Repeats database

Genome: Methanoculleus marisnigri JR1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
10671CTGCGG-CTGCGG-CGGCGG-CTGCTGDesign primers
72791ACGCGAAGTCGCGAAGCCGCGAAGDesign primers
162895ATACTGTAAGGTGCTTGGGGTG-GATCAGTAAGGTGCTTGGGGTG-GATCAGTAAGGTGCTTGGGGTG-GATCAGTAAGGTGCTTGGGGTG-GATCAGTAAGGTGCTTGGGGTG-GATCAGTAAGGTGCTTGGGGTG-GATCAGTAAGGTGCTTGGGGTGDesign primers
400804GGTTGCATCAGATTGTATCAAATTGCATCADesign primers
420398CTTCCTCGTCCTCGTCCTCTCCCTDesign primers
487614ATC-ATC-GTC-ATC-ATC-ATC-ATC-TTCDesign primers
500960GACTTCGCGCCTTCGCGTCTTCGCDesign primers
516145CGGCGTTTCTGTCTCCATCGGTGTCTCGGTCTCCATCGGGGTCTCCGTCTCCATDesign primers
523394TCTGCCTCTCCCTCTTCCTCTGCGDesign primers
546954TTCTTACGAACCATC-GCGTTACGAACCATC-GCGTTACGAACCATC-GCGTTACGAACCATC-GCGTTACGAACCATC-GCGTTACGAACCATC-GCGTTACGAACCATCDesign primers
611797CCACCCCCACGCCTACCCCCACCGDesign primers
623824GCCCTCCTCGTCGCCGCCCTCGTCGCCCTCTTCCTCDesign primers
636071TCGTATCGTTC-ATTCATCGTTC-ATTCATCGTTC-ATTCATCGTTC-ATTCATCGTTC-ATTCATCGTTC-ATTCATCGTTC-ATTCATCGTTC-ATTCATCGTTC-ATTCATCGTTC-ATTCATCGTTC-ATTCATCGTTC-ATTCATCGTTC-ATTCATCGTTC-ATTCATCGTTC-ATTCATCGTTCDesign primers
645877CCGACC-CCCACC-CCCACC-CCAACCDesign primers
763499GGGAGGTAAACCTTCCGGTTCCGGAAGATGACCCTTCCGGTTCCGGAAGATGACCCTTCCGGTTCCDesign primers
833956GGCGGACGCGGTGGACGCGGCGGACGTGGCGGACGCDesign primers
845093GATTTTCTCCGA-ACTTTTCTCCGA-ACTTTTCTCCGADesign primers
901125GCGGCAGCGGCCGGCACCGGTCGGCGGCGGDesign primers
1035527TTTTGCTTTGTTGTGGTTTGTTCTGDesign primers
1073744CGACGGCGTCGGCGCCGGCGTCGGDesign primers
1095151CGACTTGGTCCCCACTTAGTCCCAACTTGGTCCDesign primers
1179360GAGCCCGGAGCGCCCGGAGTGCCCGGADesign primers
1180434GAGAACGTTACGCCGACCCCAACG-GTGAACGTTACGCCGAGTCCGACG-GTGAACGTTACGCCGAGTCCGACG-GTGAACGTTACGCCGAGTCCGACG-GTGAACGTTACGCCGACACCGACG-GTGAACGTTACGCCGAGTCCGACG-GTGAACGTTACGCCGAGTCCGACG-GTGAACGTTACGCCGAGTCCGACG-GTGAACGTTACGCCGACACCGACG-GTGAACGTCACGCCGACACCAACGDesign primers
1181208GCGACACCAACGGTGAACGTTACG-CCGAGTCCGACGGTGAACGTTACG-CCGACTCCGACGGTGAACGTTACG-CCGACTCCGACGGTGAACGTTACG-CCGACACCAACGGTGAACGTTACG-CCGACTCCGACGGTGAACGTTACGDesign primers
1187136AGACCCCGATGGAGACCG-GGACCCCGATGGAAACGG-AGACCCCGATGGAGACCG-GGACCCCGATGGAGACCG-GGACCCCGATGGAAACGG-AGACCCCGATGGAAACGG-AGACCCCGATGGAAACGG-AGACCCCGATGGAAACGG-AGACCCCGATGGAAACGG-AGACCCCGATGGAAACGG-AGACCCCGATGGAAACGG-AGACCCCGATGGAAACGG-AGACCCCGATGGAAACGG-AGACCCCGATGGAGACCGDesign primers
1188560ACGGTC-ACGGTC-GCGGTC-CCGGTCDesign primers
1248384CCGGTCTCC-CCGATCTCC-CCGATCTCC-CCGATCTCCDesign primers
1266445TTTTCGGGGTTTTTGGGGTTTTCGGGGDesign primers
1281089GCCTTCGCGTCTTCGCGTCTTCGCDesign primers
1327663AGGGCAAGGGCGATGGCAAGCGCADesign primers
1543480CTCCGAG-ATACGAG-ATACGAG-ATACGAG-ATACGAG-ATACGAGDesign primers
1637294GCGCTCCGGCGATCCGGCTCTCCGDesign primers
1837684TTACGAACCATCGCG-TTACGAACCATCGCG-CTACGAACCGTGGCG-TTACGAACCGTCGCTDesign primers
1905077GCTCAACCCCAA-CCGTAACCCCAA-CTGTAACCCCAA-CCGTAACCCCAA-CCGTAACCCCAA-CCGTAACCCCAADesign primers
1939565CCTCGTCGTCCTCCTCGTCCTTGTCGTDesign primers
2148359GAGGTCGAGGTAGCGGTCGAGCTCDesign primers
2334707TGCCCATGC-CGCCCATGC-CGCCCATGCDesign primers
2388944TGCTGCTGCCGTTACTGATGCCGTTGCTGCTGCCGGDesign primers
2390985CGG-CGG-TGG-CGG-TGG-CGG-TGG-CGGDesign primers
2432656CCTTCGGCGTCCACAACG-AGGTCGGCGTCCACAACG-AGGTCGGCGTCCACAACGDesign primers
2434652ACG-CCG-TCG-ACG-ACG-GCG-GCG-ACG-ACG-GCG-GCG-ACGDesign primers
2463219GCGCGAAGACGCGAAGGCGCGAAGDesign primers

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