Microsatellites /Tandem Repeats database

Genome: Saccharopolyspora erythraea NRRL 2338

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
148612CGACAGCAACTCCGACAGCGACAG-CGACAGCAACTCCGACAGCGACAG-CGACAGCAACTCCGACAGCGACAGDesign primers
249220CAAGCC-CAAGCC-CAAGCC-CAAGCCDesign primers
277076TGGGACGGC-TGGGACGGC-TGGGACGGCDesign primers
522053TGGGACGGC-TGGGACGGC-TGGGACGGCDesign primers
524645GGGTTTGC-GGGTTTGC-GGGTTTGCDesign primers
740114CCCGGCTG-CCCGGCTG-CCCGGCTG-CCCGGCTG-CCCGGCTG-CCCGGCTG-CCCGGCTGDesign primers
751797GCCGGGA-GCCGGGA-GCCGGGA-GCCGGGA-GCCGGGADesign primers
843625GGTTCCGA-GGTTCCGA-GGTTCCGA-GGTTCCGA-GGTTCCGA-GGTTCCGADesign primers
862859AGGCGTGGAAGCGGGCCG-AGGCGTGGAAGCGGGCCG-AGGCGTGGAAGCGGGCCGDesign primers
1088488CTTGCCGCC-CTTGCCGCC-CTTGCCGCCDesign primers
1127895AGCGGCTGGGGTCCGCCGCCGCGT-AGCGGCTGGGGTCCGCCGCCGCGT-AGCGGCTGGGGTCCGCCGCCGCGTDesign primers
1202240CTTGCTGTTGCGGACCGG-CTTGCTGTTGCGGACCGG-CTTGCTGTTGCGGACCGGDesign primers
1372539CGGCGTAG-CGGCGTAG-CGGCGTAGDesign primers
1915702GAGGAACGGAGCCT-GAGGAACGGAGCCT-GAGGAACGGAGCCT-GAGGAACGGAGCCTDesign primers
2116502AGTCCGGTGAGC-AGTCCGGTGAGC-AGTCCGGTGAGCDesign primers
2331319GTGCTGCTG-GTGCTGCTG-GTGCTGCTGDesign primers
3311584CGGCGGCAA-CGGCGGCAA-CGGCGGCAADesign primers
3311620CGGCGGCGA-CGGCGGCGA-CGGCGGCGA-CGGCGGCGADesign primers
3316891GCCGTTGCC-GCCGTTGCC-GCCGTTGCCDesign primers
3381070GGACAT-GGACAT-GGACAT-GGACATDesign primers
4265936CCCGACCGG-CCCGACCGG-CCCGACCGGDesign primers
4640573GCCGCACCGGC-GCCGCACCGGC-GCCGCACCGGCDesign primers
4978095CCTGCTCGTTGGCGT-CCTGCTCGTTGGCGT-CCTGCTCGTTGGCGT-CCTGCTCGTTGGCGTDesign primers
5128325ATGCCGTCCGGCCTTCCGTGGCG-ATGCCGTCCGGCCTTCCGTGGCG-ATGCCGTCCGGCCTTCCGTGGCGDesign primers
5301714GGCGGGC-GGCGGGC-GGCGGGC-GGCGGGCDesign primers
5670962CGAAGGTGC-CGAAGGTGC-CGAAGGTGCDesign primers
5977690TCCGCGGGCTGGGCGGCGT-TCCGCGGGCTGGGCGGCGT-TCCGCGGGCTGGGCGGCGTDesign primers
5984601CGGCCGCCGGAGGCGGACGG-CGGCCGCCGGAGGCGGACGG-CGGCCGCCGGAGGCGGACGGDesign primers
6057472GGGGCGGGGTGGTCGAGT-GGGGCGGGGTGGTCGAGT-GGGGCGGGGTGGTCGAGTDesign primers
6262372CAGGTCGCGTGCCGGG-CAGGTCGCGTGCCGGG-CAGGTCGCGTGCCGGGDesign primers
6430393CGGCTCCCGCGG-CGGCTCCCGCGG-CGGCTCCCGCGG-CGGCTCCCGCGGDesign primers
6653597GCTCGGAGCGCGGCT-GCTCGGAGCGCGGCT-GCTCGGAGCGCGGCTDesign primers
6692360CGGGCTCGGCAGTACCGG-CGGGCTCGGCAGTACCGG-CGGGCTCGGCAGTACCGG-CGGGCTCGGCAGTACCGGDesign primers
7046100CGGTCTCCGCGGTCCTGC-CGGTCTCCGCGGTCCTGC-CGGTCTCCGCGGTCCTGCDesign primers
7239213GGTGCGGGCAGTGCG-GGTGCGGGCAGTGCG-GGTGCGGGCAGTGCG-GGTGCGGGCAGTGCGDesign primers
7261573TCGCTTGGGCGGGCA-TCGCTTGGGCGGGCA-TCGCTTGGGCGGGCADesign primers
7313666GCCGCCGTG-GCCGCCGTG-GCCGCCGTGDesign primers
7325710GCGGGAGCGGC-GCGGGAGCGGC-GCGGGAGCGGCDesign primers
7325744CGGGAGCGGAG-CGGGAGCGGAG-CGGGAGCGGAGDesign primers
7325778GGGAACGGAGC-GGGAACGGAGC-GGGAACGGAGC-GGGAACGGAGC-GGGAACGGAGC-GGGAACGGAGC-GGGAACGGAGCDesign primers
7325856GGAGCG-GGAGCG-GGAGCG-GGAGCG-GGAGCGDesign primers
7325913GGAGCG-GGAGCG-GGAGCG-GGAGCGDesign primers
7326687CGCCAGCCCTGCCA-CGCCAGCCCTGCCA-CGCCAGCCCTGCCADesign primers
7453744CGGACGACGTCGATGG-CGGACGACGTCGATGG-CGGACGACGTCGATGGDesign primers
7644879GGCTGC-GGCTGC-GGCTGC-GGCTGCDesign primers
7675060AGCGGC-AGCGGC-AGCGGC-AGCGGCDesign primers
7739079ACCGGAGGA-ACCGGAGGA-ACCGGAGGA-ACCGGAGGADesign primers

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