Microsatellites /Tandem Repeats database

Genome: Saccharopolyspora erythraea NRRL 2338

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
116640GACCGGCACGCGACCTGCCCGGCACGCGACCTGCCCGGCACGCGACCTDesign primers
148608ACTCCGACAGCAACTCCGACAGCGACAGCGACAGCAACTCCGACAGCGACAGCGACAGCAACTCCGACAGCGDesign primers
249220CAAGCC-CAAGCC-CAAGCC-CAAGCCDesign primers
277076TGGGACGGC-TGGGACGGC-TGGGACGGCDesign primers
522053TGGGACGGC-TGGGACGGC-TGGGACGGCDesign primers
524645GGGTTTGC-GGGTTTGC-GGGTTTGCDesign primers
722322GCCCCCAAGCCAA-GCCGCCAAGCCAA-GCCGCCAAGCCAA-GCCCCCAAGCCAADesign primers
740113TCCCGGCT-GCCCGGCT-GCCCGGCT-GCCCGGCT-GCCCGGCT-GCCCGGCTDesign primers
751797GCCGGGA-GCCGGGA-GCCGGGA-GCCGGGA-GCCGGGADesign primers
843623GCGGTTCC-GAGGTTCC-GAGGTTCC-GAGGTTCC-GAGGTTCC-GAGGTTCCDesign primers
856803CGCAGCCCGGACAGTCGCAGCCCGGACAGCCGCAGCCCGGGCAGTDesign primers
857243GGCCAGAGCCACCAGCCGGGCGAGAGCCACCAGCCGGGCCAGAGCCACCAGCCADesign primers
862856CCCAGGCGTGGAAGCGGG-CCGAGGCGTGGAAGCGGG-CCGAGGCGTGGAAGCGGG-CCGAGGCGTGGAAGCGGGDesign primers
927684CGCCTGCCGGGGTCGCCCGCCGGGGTCGCCTGCCGGGGGDesign primers
1088488CTTGCCGCC-CTTGCCGCC-CTTGCCGCCDesign primers
1119013GCGGCCTTCTTCCCGGCCTTCTTCGCGGCCTTCTTGDesign primers
1127883ACGCCGCCGCGAAGCGGCTGGGGTCCGCCGCCGCGTAGCGGCTGGGGTCCGCCGCCGCGTAGCGGCTGGGGTDesign primers
1202233GGACCGCCTTGCTGTTGCGGACCGGCTTGCTGTTGCGGACCGGCTTGCTGTTGCDesign primers
1372539CGGCGTAG-CGGCGTAG-CGGCGTAGDesign primers
1915700CCGAGGAACGGAGC-CTGAGGAACGGAGC-CTGAGGAACGGAGC-CTGAGGAACGGAGCDesign primers
2116501GAGTCCGGTGAG-CAGTCCGGTGAG-CAGTCCGGTGAGDesign primers
2331319GTGCTGCTG-GTGCTGCTG-GTGCTGCTGDesign primers
2445802GGCGGTACGGACAACGGCGGCACGGACAACGGCGGTACCGACAACDesign primers
2823802TGGCTGGGGGCT-TGGCTGGGGGCT-TGGCTGGGGGGTDesign primers
2909369GCGTGATGAAAT-GCGTGATGAAAT-GCGTGATGGAATDesign primers
3310487TCGCCGCCGCCGTGGCCGCCGCCGTGGCCGCCGCCGDesign primers
3311584CGGCGGCAA-CGGCGGCAA-CGGCGGCAADesign primers
3311620CGGCGGCGA-CGGCGGCGA-CGGCGGCGA-CGGCGGCGADesign primers
3316891GCCGTTGCC-GCCGTTGCC-GCCGTTGCCDesign primers
3381055CACGGACATGGA-CACGGACATGGA-CATGGACATGGADesign primers
3584294CCAGAACGCGGCTGACACCCAGAACGCGGCTGACGCCCGGAACGCGGCTGACACDesign primers
4265936CCCGACCGG-CCCGACCGG-CCCGACCGGDesign primers
4541415CCCGGTGTGATCGGGCTGGGCCTTGTGTGATCGGGCTGGGCCCGGTGTGGTCGGTCTGGGDesign primers
4640571GAGCCGCACCGGCGCCGCACCGGCGCCGCACCGDesign primers
4978090GGCGCCCTGCTCGTT-GGCGTCCTGCTCGTT-GGCGTCCTGCTCGTT-GGCGTCCTGCTCGTTDesign primers
5128315TTCCGGGGCTATGCCGTCCGGCCTTCCGTGGCGATGCCGTCCGGCCTTCCGTGGCGATGCCGTCCGGCCDesign primers
5243107TGGGGTCACGGCTGGGGCTGGGGCCACGGCTGGGGCTGGGGTCACGGCTGGGGCDesign primers
5301714GGCGGGC-GGCGGGC-GGCGGGC-GGCGGGCDesign primers
5670962CGAAGGTGC-CGAAGGTGC-CGAAGGTGCDesign primers
5965848GGCGGACCTGGAGGCTGGCCGGGTGGCGGGCCTGCAGGCTGGCCGGGTGGCGGGCCTGGAGGCTGGCCGGGTDesign primers
5977686GCGGTCCGCGGGCTGGGCGGCGTTCCGCGGGCTGGGCGGCGTTCCGCGGGCTGGGCGDesign primers
5984599TCCGGCCGCCGGAGGCGGAC-GGCGGCCGCCGGAGGCGGAC-GGCGGCCGCCGGAGGCGGACDesign primers
5985296GCGGTGGCCCCGGCGGCAGCGGCGGTGGTCCTGGCGGCAGCGGCGGTGGCCCCGGCAGCAGCGDesign primers
6057463TGGTCGAGCGGGGCGGGGTGGTCGAGTGGGGCGGGGTGGTCGAGTGGGGCGGGGDesign primers
6262364GTGCCGGTCAGGTCGC-GTGCCGGGCAGGTCGC-GTGCCGGGCAGGTCGC-GTGCCGGGCAGGTCGCDesign primers
6281874CGGAGAAGGCCAAGCCTGAGAAGGCCAAGCCGGAGAAGGCGAAGCDesign primers
6430392CCGGCTCCCGCG-GCGGCTCCCGCG-GCGGCTCCCGCG-GCGGCTCCCGCGDesign primers
6467103CGGCCGTCGTCAGCTCCCCGGCGGCCGTCGTCAGCTCTCCAGCGGCCGTCGTCAGCTCTCCGCDesign primers
6600258CTGCCCGCCGGTCACCTGCTGCTG-CTGCCCGCCGGTCACCTGCTGCTG-CTGGCCGCCGGTGACCTGCTGCTGDesign primers
6653595CCGCTCGGAGCGCGGCTGCTCGGAGCGCGGCTGCTCGGAGCGCGGDesign primers
6692357CGACGGGCTCGGCAGTAC-CGGCGGGCTCGGCAGTAC-CGGCGGGCTCGGCAGTAC-CGGCGGGCTCGGCAGTACDesign primers
6957347GGCCGCGCCCGGCTCAGCTCGCGGACGTGCCCGGCTCAGCTCGCGGCCGCGCCCGGCTCAGCTACCDesign primers
7046088CCGCGGTCCTGGCGGTCT-CCGCGGTCCTGCCGGTCT-CCGCGGTCCTGCCGGTCT-CCGCGGTCCTGCCGGTCTDesign primers
7239208GTGCCGGTGCGGGCA-GTGCGGGTGCGGGCA-GTGCGGGTGCGGGCA-GTGCGGGTGCGGGCA-GTGCGGGTGCGGGCADesign primers
7261568GGGCTTCGCTTGGGCGGGCATCGCTTGGGCGGGCATCGCTTGGGCDesign primers
7313666GCCGCCGTG-GCCGCCGTG-GCCGCCGTGDesign primers
7325706GGGAGCGGGAG-CGGCGCGGGAG-CGGCGCGGGAG-CGGCGCGGGAG-CGGAGCGGGAG-CGGAGCGGGAGDesign primers
7325773GGAGCGGGAAC-GGAGCGGGAAC-GGAGCGGGAAC-GGAGCGGGAAC-GGAGCGGGAAC-GGAGCGGGAAC-GGAGCGGGAAC-GGAGCGGGAGCDesign primers
7325862GGAGCG-GGAGCG-GGAGCG-GGAGCGDesign primers
7325913GGAGCG-GGAGCG-GGAGCG-GGAGCGDesign primers
7326685CCCGCCAGCCCTGCCACGCCAGCCCTGCCACGCCAGCCCTGCDesign primers
7453741TGACGGACGACGTCGATGGCGGACGACGTCGATGGCGGACGACGTCGADesign primers
7644879GGCTGC-GGCTGC-GGCTGC-GGCTGCDesign primers
7675060AGCGGC-AGCGGC-AGCGGC-AGCGGCDesign primers
7739079ACCGGAGGA-ACCGGAGGA-ACCGGAGGA-ACCGGAGGADesign primers
7936448CCCCCGTCAATGCCCAGGTGCACGCGCCGTCAATGCCCAGGTGCACGCGCCGTCAATGCCCAGGTGCACDesign primers
8163464CGTCGGCGGGGCCGAGGTCGTCGGCGGCGCCGAGGTGGTCGGCGGGGCCGAGGTDesign primers

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