Microsatellites /Tandem Repeats database

Genome: Aeromonas salmonicida subsp. salmonicida A449

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
577949CGTTATGC-CGTTATGC-CGTTATGC-CGTTATGC-CGTTATGC-CGTTATGCDesign primers
645995ATGGTC-ATGGTC-ATGGTC-ATGGTCDesign primers
874883TTGTTT-TTGTTT-TTGTTT-TTGTTTDesign primers
945424TGCCAC-TGCCAC-TGCCAC-TGCCACDesign primers
1027676TGATGC-TGATGC-TGATGC-TGATGC-TGATGC-TGATGC-TGATGCDesign primers
1375962CTGCTGATC-CTGCTGATC-CTGCTGATC-CTGCTGATC-CTGCTGATC-CTGCTGATCDesign primers
2008654CTGCGTGAC-CTGCGTGAC-CTGCGTGAC-CTGCGTGAC-CTGCGTGACDesign primers
2020402GGATAACG-GGATAACG-GGATAACG-GGATAACG-GGATAACG-GGATAACGDesign primers
2424354TGAGAAGT-TGAGAAGT-TGAGAAGT-TGAGAAGT-TGAGAAGT-TGAGAAGTDesign primers
2540303AGCTGGC-AGCTGGC-AGCTGGC-AGCTGGCDesign primers
2747176AAATTAA-AAATTAA-AAATTAA-AAATTAA-AAATTAA-AAATTAADesign primers
2957961CAGCCGGGCAGCGCATCGAG-CAGCCGGGCAGCGCATCGAG-CAGCCGGGCAGCGCATCGAGDesign primers
3038306ATTTACGTT-ATTTACGTT-ATTTACGTT-ATTTACGTTDesign primers
3043076ATGATGAGCC-ATGATGAGCC-ATGATGAGCC-ATGATGAGCCDesign primers
3094954GCCGGAGCT-GCCGGAGCT-GCCGGAGCT-GCCGGAGCTDesign primers
3139412GGCAACACA-GGCAACACA-GGCAACACA-GGCAACACADesign primers
3686936GCCAGCTC-GCCAGCTC-GCCAGCTCDesign primers
3788406CCAGCTTGA-CCAGCTTGA-CCAGCTTGADesign primers
4298057CAGCATGA-CAGCATGA-CAGCATGA-CAGCATGADesign primers
4364353TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAG-TTGAGGCAGDesign primers
4423147GAAGGGATAAA-GAAGGGATAAA-GAAGGGATAAADesign primers
4454590ATGCTGCACTCT-ATGCTGCACTCT-ATGCTGCACTCTDesign primers

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