Microsatellites /Tandem Repeats database

Genome: Psychrobacter sp. PRwf-1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
18110TCTGGCTA-TCTGGCTA-TCTGGCTADesign primers
63222TGGCTTATTAACTAT-TGGCTTATTAACTAT-TGGCTTATTAACTAT-TGGCTTATTAACTATDesign primers
70624TATCTAG-TATCTAG-TATCTAG-TATCTAG-TATCTAGDesign primers
128000AGCCTACCAATCATG-AGCCTACCAATCATG-AGCCTACCAATCATGDesign primers
206216TAGATAATAACTGG-TAGATAATAACTGG-TAGATAATAACTGGDesign primers
263488ATTTAGCTA-ATTTAGCTA-ATTTAGCTADesign primers
326216GCTAAGCA-GCTAAGCA-GCTAAGCADesign primers
415218TTGTGG-TTGTGG-TTGTGG-TTGTGGDesign primers
425305GACTTAAAC-GACTTAAAC-GACTTAAACDesign primers
594883TTTAGCGACAGCGAACACAT-TTTAGCGACAGCGAACACAT-TTTAGCGACAGCGAACACAT-TTTAGCGACAGCGAACACATDesign primers
919896TTAGGA-TTAGGA-TTAGGA-TTAGGA-TTAGGADesign primers
1019253AAAGATAAAA-AAAGATAAAA-AAAGATAAAADesign primers
1064827TTTA-TTTA-TTTA-TTTA-TTTA-TTTA-TTTA-TTTADesign primers
1198435CTTAGATAA-CTTAGATAA-CTTAGATAADesign primers
1198463TTACATAAC-TTACATAAC-TTACATAAC-TTACATAACDesign primers
1244037AATC-AATC-AATC-AATC-AATC-AATC-AATCDesign primers
1791646TCTATGCTT-TCTATGCTT-TCTATGCTT-TCTATGCTTDesign primers
1849748TTTTGGCTCAGG-TTTTGGCTCAGG-TTTTGGCTCAGGDesign primers
2241387GCCCAAGTCG-GCCCAAGTCG-GCCCAAGTCGDesign primers
2393147TAAATAGGT-TAAATAGGT-TAAATAGGT-TAAATAGGTDesign primers
2395475CTGAAGCAGTTAAGC-CTGAAGCAGTTAAGC-CTGAAGCAGTTAAGC-CTGAAGCAGTTAAGCDesign primers
2423743TTCCATTACCGGTTTCGCCACCGT-TTCCATTACCGGTTTCGCCACCGT-TTCCATTACCGGTTTCGCCACCGTDesign primers
2425165TTTCAGTATCCGGGT-TTTCAGTATCCGGGT-TTTCAGTATCCGGGTDesign primers
2425284GTTTCAGTATCTGGT-GTTTCAGTATCTGGT-GTTTCAGTATCTGGT-GTTTCAGTATCTGGTDesign primers
2425446GGGGTTTCAGTATCT-GGGGTTTCAGTATCT-GGGGTTTCAGTATCT-GGGGTTTCAGTATCTDesign primers
2549359GGCTCAATAGTTTCAACTTCA-GGCTCAATAGTTTCAACTTCA-GGCTCAATAGTTTCAACTTCA-GGCTCAATAGTTTCAACTTCADesign primers
2888734CTGATA-CTGATA-CTGATA-CTGATADesign primers
2950228TCATTGATGGCT-TCATTGATGGCT-TCATTGATGGCTDesign primers
2970118CGCCCAGT-CGCCCAGT-CGCCCAGTDesign primers

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