Microsatellites /Tandem Repeats database

Genome: Flavobacterium psychrophilum JIP02/86

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
123607AAACATTAA-AAACATTAA-AAACATTAADesign primers
166041AGGCAAT-AGGCAAT-AGGCAAT-AGGCAATDesign primers
251582AAAGTTT-AAAGTTT-AAAGTTT-AAAGTTTDesign primers
366413AAATCTA-AAATCTA-AAATCTA-AAATCTA-AAATCTADesign primers
609889ATAATTGATAATTAACAATTGATAATTAACAATTGATAATTADesign primers
752484TGTATCAAAGTGTGTCAAAGTGTGTCAAAGDesign primers
850530TTTAACCACAAAGTTCACAAAGTAAAACCACAAAGTTCACAAAGTAAAACCACAAAGTTCACAAAGDesign primers
850597AAAACCACAAAGTTTACAAAGT-AAAAACACAAAGTTCACAAAGT-AAAACCACAAAGTTCACAAAGT-AAAACCACAAAGTTCACAAAGT-AAAAACACAAAGTTTACAAAGT-AAAACCACAAAGTTCACAAAGT-AAAACCACAAAGTTCACAAAGT-AAAACCACAAAGTTCACAAAGT-AAAACCACAAAGTTTACAAAGT-AAAACCACAAAGTTCACAAAGT-AAAAACACAAAGTTTACAAAGT-AAAAACACAAAGTTCACAAAGTDesign primers
1105783TAAAGTCA-TAAAGTCA-TAAAGTCADesign primers
1212736ATTAGGC-ATTAGGC-ATTAGGC-ATTAGGC-ATTAGGCDesign primers
1547697ATTTAAAG-ATTTAAAG-ATTTAAAG-ATTTAAAGDesign primers
1657354CTG-GTG-GTG-GTG-ATG-GTG-GTG-GTG-GTG-GTG-GTG-GTGDesign primers
2020835TTTTTG-TTTTTG-TTTTTG-TTTTTGDesign primers
2021285TTTTTGAG-TTTTTGAG-TTTTTGAGDesign primers
2042856TAATCTG-AAATCTG-AAATCTG-AAATCTG-AAATCTG-AAATCTG-AAATCTG-AAATCTGDesign primers
2158401TTTG-TTTG-TTTG-TTTG-TTTG-TTTG-TTTGDesign primers
2217105TTATGGTAAACTGATGGTAAACTGATGGTAAACDesign primers
2547391ATTTTAG-ATTTTAG-ATTTTAG-ATTTTAGDesign primers
2627182AATCCACA-AATCCACA-AATCCACADesign primers

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