Microsatellites /Tandem Repeats database

Genome: Flavobacterium psychrophilum JIP02/86

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
3287AAGGAAAGGGAAAAGGACAAGGAADesign primers
23636AAAGCCGAAGCCGAAGCCAAAGCADesign primers
43460AAAATCTGAAATCTAAAATCTGAAATCTAAAATCTDesign primers
44871AAACC-AAACA-AGACC-AACCC-AACCC-AAACCDesign primers
77414AAATTAAAAATTACGAATTAAAAATTATDesign primers
92823TTTATTAATATCTATTGATATTAATTGATADesign primers
107447TCGGTTGTAATTGTTTGTAACCGTTTGTAADesign primers
110318TTGCTTTGGCTTTTGTTTTGGCTTDesign primers
123606TAAACATTA-AAAACATTA-AAAACATTADesign primers
135756ATGATTTTATGATTTAATAATTTTDesign primers
146922AATTATCAATTGTCAATTATCAATTATCAATTATADesign primers
163016TTTTTTTCTTTCTTTTTTCTTTTTTDesign primers
166039AAAGGCA-ATAGGCA-ATAGGCA-ATAGGCA-ATAGGCADesign primers
200754TGGTAATTCGTAATTTGTAATTTGTAATDesign primers
242982AAAGAATAATAAATGATAATAAATAAAAATDesign primers
251579TTGAAAG-TTTAAAG-TTTAAAG-TTTAAAGDesign primers
252791GAATTACAAATTACAAATTACGAATTGCDesign primers
284874GGTGGTGGTGGTGCTGGTGGTGGTDesign primers
288696ATTTTAGATTTCAGACTTTAGATTTTAGATTTTTGDesign primers
289232TAATTGA-TAATTGA-TAGTTGA-TAATTGADesign primers
289464AATTGTG-AATTATG-AATTATG-AATTGTGDesign primers
291953TTGCG-TTTTG-TTTTG-TTTTG-TTTCG-TTTTGDesign primers
297841TTTAGAT-TTTAGAT-TTTAAAT-TTTAGATDesign primers
309472TTTTTTTAATTTTTTTTTAATTTTTTTGCTDesign primers
358918TCTTTTGTTTTATTTTCGTTTATTTDesign primers
366412TAAATCT-AAAATCT-AAAATCT-AAAATCT-AAAATCTDesign primers
371611GCAAAAGAAACAAAAGCAACCGAAACCAAAGAGAAAGCAACAAAADesign primers
409575TTTAGATCTTAGATTTTAGATTTTAGAADesign primers
446691AAGTTTAAAAGTTTATGAGTTTAADesign primers
446734TAAACTTTCTAAGCTTTCTAAACTTTCTAAACTTCCTAAACTTTADesign primers
453412ACCGAATAAACGAATAAACGAATADesign primers
456527TAAATCT-GAAATCT-AAAATCT-AAAATCTDesign primers
467903CTGCAACTGAAGCTGTAGCACCTGCTGCTGAAGCTGCTGCACCTGCTGCTGAAGCTGCTGCACDesign primers
469269TAAATTGCATCAATTTGCATAAAATTGCAADesign primers
505953TTTGTTAG-GTTGTTAG-GTTGTTAGDesign primers
528079TCGAAAAATCTAAAAATCTAAAAADesign primers
537573ATTTTATTTTGTTTAATTTTATTTTATTCGDesign primers
538601TT-TA-TT-AT-AT-TT-TC-TT-TT-AT-TT-TT-TDesign primers
565263TTTTGTATTGTCTTGGTTTGTTTAGDesign primers
573370ATTTAAGATTTTAGAATTAAGATTTTAGDesign primers
609883TAATTGA-TAATTGA-TAATTAA-CAATTGA-TAATTAA-CAATTGADesign primers
611513GTTTTGGTTTGTTCTGATTTGCTTTDesign primers
657905AATATCAAAAATCAATATCAAAAAATAATATCAAGAAACDesign primers
661718CCGCAGTTATATTTATAGCTTCCGCAGTTATATTTATGCCTTCCGCAGTTTCATTTGTACCTTDesign primers
674476AGTATAAATATAACTGCGTAAGCTATAAATATAACTGCGTAAGCTATAAATATAGCTGCGCAAGGCATAAATATAACCGCGGAADesign primers
714569AT-TA-AT-GT-TT-TG-TT-AA-TA-TT-TT-AT-TT-CT-GT-TT-TDesign primers
727382AAATTCATAATTCACAATTCATAATTCADesign primers
749313TTTGAGTACTTCGAGTACTTTGAGTATDesign primers
752483TTGTATCAAAGTGTGTCAAAGTGTGTCAAADesign primers
763421AATAAAAGAAAGTAAAATGAAACAADesign primers
779677AAAAATAAAAAAAAAACAAAAAAAADesign primers
850528GTTTTAACCACAAAGTTCACAAAGTAAAACCACAAAGTTCACAAAGTAAAACCACAAAGTTCACAADesign primers
850595GTAAAACCACAAAGTTTACAAAGTAAAAACACAAAGTTCACAAAGTAAAACCACAAAGTTCACAAAGTAAAACCACAAAGTTCACAAAGTAAAAACACAAAGTTTACAAAGTAAAACCACAAAGTTCACAAAGTAAAACCACAAAGTTCACAAAGTAAAACCACAAAGTTCACAAAGTAAAACCACAAAGTTTACAAAGTAAAACCACAAAGTTCACAAAGTAAAAACACAAAGTTTACAAAGTAAAAACACAAAGTTCACAAAGTAAAAACACAAAGTTCACAAGDesign primers
867914AAGTCATAAAGTCTTAATGTCATADesign primers
907655TTTAATTTTTTAAGTTTTTAAGTTDesign primers
916631TTTTTTTTATTCTTTCTTTTTTTTCDesign primers
917671TTATTATATTTTTTTATATTTTCTTDesign primers
991538TTTAATAC-TTTAATAC-TATAATACDesign primers
1041631ATTTAAGATTTTAGAATTAAGATTTTAGDesign primers
1105782GTAAAGTC-ATAAAGTC-ATAAAGTCDesign primers
1151170AATAA-AATAT-AATAT-AAAAA-AATATDesign primers
1212734GAATTAG-GCATTAG-GCATTAG-GCATTAG-GCATTAGDesign primers
1220384GATTTAGAATTAGGTTTAAATTTADesign primers
1227502TTTTTTAAAAATTTTAAAAATAATTTAAAADesign primers
1241724AATCTAAAATCTTAATTCTAAAATCTTADesign primers
1259980CAATTGA-TAATTGA-TAATTGA-CAATTGADesign primers
1264956ATATTGAAAAATATTCAATAATACCGAAAADesign primers
1306739CATTTCA-GATTTCA-GATTTCA-GATTTCADesign primers
1374999AATCTACAATCTAAAATCTGCAATCTAGDesign primers
1427546AATAAACAAATAACCAAATCAACAAATAACCADesign primers
1429656AAAAAAAGCAATAAAAAGGCAATAAAAAAGCATDesign primers
1464966CCAACACCAATACCAACACCAATADesign primers
1547695AAATTTAA-AGATTTAA-AGATTTAA-AGATTTAADesign primers
1550141AATTATTAATTATCAATTGTTAATTATCAATTAATDesign primers
1588206AATCTAAAATCTTAATTCTAAAATCTTADesign primers
1597616TTTAGATTTTAGAATTAAGATTTTAGATDesign primers
1657353ACT-GGT-GGT-GGT-GAT-GGT-GGT-GGT-GGT-GGT-GGT-GGTDesign primers
1658043AATCTGA-AATCTAA-AATCTAA-AATCTAADesign primers
1665716AAAGTTGAAAGTCGAAAGTCGAAAGTTTDesign primers
1678200TAAATTAATTTAGATTAAATTAAAADesign primers
1705977ATAACACCTCCTGCAACACCTCCTATAACACCACCTDesign primers
1723970AATCTAAAATCTTAATTCTAAAATCTTADesign primers
1749640TTATTTCTATTTTAATTTTTGTTTDesign primers
1792556TTT-TTC-TTC-TTC-TTT-TTT-TTC-TTCDesign primers
1827478AAAATTAATATTAAAATTGAAATTDesign primers
1833498TAATTTTATTTTCATTGTATTTTATTTTTAATTDesign primers
1835744TGTTTTT-TGTTTTT-TATTTTT-TGTTTTADesign primers
1880613TCGTAATTTGTAATTCGTAATTCGTAATDesign primers
1892161AG-AT-AA-AA-GA-CA-AA-AG-AT-AA-AA-GA-CA-AADesign primers
1900830AGTTTCAAAGTATCAAAGTTACAADesign primers
1929699TGGCGGCGGTGGCGGTGGCGGTGGTGGCGGCGGTTGDesign primers
1935938AA-AA-AA-AC-AA-AA-AC-AA-AA-AC-AA-AA-ADesign primers
1937227TGA-TGA-CGA-TGA-CGA-CGA-TGA-TGA-TGADesign primers
1955158TCTTAATACTTAATTCTTCATTCTTAATDesign primers
1955207AAATCTTAATTCTTCAATCTTCAATCTTDesign primers
1962618TTTTTTTTTATTTTTTATTTTTTTADesign primers
1973403AAAAAAAGGAAAAAAAAAAGGAAAAAAAAAGAGDesign primers
2020832TT-TT-TT-TT-GT-TT-TT-GT-TT-TT-GT-TT-TDesign primers
2021284TTTTTTGA-GTTTTTGA-GTTTTTGADesign primers
2030659TTTTGTGCTGTCTTTTGCTGTTTTGTTTTGDesign primers
2042855TTAATCT-GAAATCT-GAAATCT-GAAATCT-GAAATCT-GAAATCT-GAAATCT-GAAATCTDesign primers
2048675AGATAATTAGAAAATTAGAAAATTDesign primers
2065488ATTTTAGATTTCAGATGTTAGATTTGAGDesign primers
2068005GGTTTGTTTTTGCTTGTTTTGGTTTTTATTDesign primers
2118756CAAAGTTACAAAGATACAAAGTTGDesign primers
2158400ATTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTTDesign primers
2160546ATCAATTATCAATAACCAATTATCAATTDesign primers
2164369ATCAATT-GTCAATT-GTCAATT-ATCAATTDesign primers
2164894TCAATATCAATGACAATATCAATGDesign primers
2217102AATTTATGGTAAACTGATGGTAAACTGATGGTADesign primers
2227837TTTTTATTTTTTTTTAGTTCTGTTTTTTTTDesign primers
2276519TCTGAAA-TCTGAAA-TCTAAAA-TCTGAAA-TCTAAAADesign primers
2293796TCATTTTTATTTATTTTTTTTAATTATTATDesign primers
2314174TTGTAATTCGTAATTTGAAATTCGTAATDesign primers
2336325TT-TT-TG-TT-CT-TG-TT-TT-TG-TT-TT-TTDesign primers
2348147TTTTAACTTTTTTACTTTTTTACTDesign primers
2349457CTTTTGACTTTCGACTTTTGACTTTCGACTTTTTADesign primers
2350200ATTAATTATAAATTATTAATTATCAATTATTAGTTDesign primers
2385975ATTTTCCAAATCTTCCAAATCTTCCAADesign primers
2415829AAAAAATCAAAAAAATGAAAAAAATCADesign primers
2438327TTGTTTTTTTTCGTTTTGCTTTTTTDesign primers
2471442TCA-TCG-TCG-TCG-TCA-TCT-TCA-TCGDesign primers
2501543AATCTAAAATCTTAATTCTAAAATCTTADesign primers
2547390TATTTTA-GATTTTA-GATTTTA-GATTTTADesign primers
2579275TTATTTGGTTATTCGGTTATTTGTDesign primers
2592928AA-GC-AA-AA-AA-AC-AA-AA-AA-AC-AA-AADesign primers
2599982TTTAGATTTTAGAATTCAGATTTTAGATDesign primers
2600408AAATCTAAAATCTGAACTCTAAAATCTADesign primers
2619079GTGCTAAATGTGCTAATTGTACTAAATDesign primers
2627180CGAATCCACAAATCCACAAATCCADesign primers
2706076AAAGTCAAAAATCAAAAGTCGCAAGTCADesign primers
2779308AAAAAAAGAAGAAAAAAGAAGAAAADesign primers
2788302GCTTTTGCATTTGCGTTTACTTTTDesign primers
2795974AAGAAACTCAAAAAACTCAAGAAACTCDesign primers
2807465TT-AT-TT-TC-AT-TT-TT-AT-TT-TT-TT-TTDesign primers
2847711ATTGGCATCGGCTTTGGCTTTGGCDesign primers

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