Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Clostridium kluyveri DSM 555

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
34250	TTTTTGAATCTTTTAGAAGCTTTTTTAATA	Design primers
37779	ATAATTGTAATTATATTTATAACT	Design primers
126772	TTTATACTTATATTTATTATTATA	Design primers
190563	TATTGTATTATTCTATTAGTGTAT	Design primers
265547	TAAAGAAGAAGG-AAGAGAAGAAGG-AAGAGAAGAAGG-AAGAGAAGAAGG	Design primers
323027	AATTAAAATGAAATTAAATTTAAATGAAGATGA	Design primers
473974	ATTTTATTTAAATTTAGTTTGTTTT	Design primers
557713	TTATTTTATTATTTGATTGTTTTA	Design primers
559365	ATTATTATTAGTATTATAGTTATT	Design primers
590392	GTTATAGGTATAGCTATAATTATA	Design primers
636488	AATTGTGAATCGTGAATTGTACATTGTG	Design primers
702016	AAAATAACATAAAAGAAATTACAAT	Design primers
716848	AAAACTATTATAAACTTTTAAAAACCATAA	Design primers
723621	AATTCACAATTTACAGTTCACAATGCAC	Design primers
792072	ATATACTATAATATATTATAGTATA	Design primers
841683	AATTAAATGAAATAAAATTTTATTA	Design primers
975214	TT-TT-TT-TA-TT-TT-TT-GT-TT-TA-TA-TT-T	Design primers
1048828	TT-TT-TA-TA-TA-TT-AT-AA-TA-TA-TT-TT-TA-TT-TA	Design primers
1109011	TTTTATAAATTTTATAATTTTTATATA	Design primers
1186287	AT-AA-AA-AT-AG-AA-AT-AT-AA-AT-AA-AA	Design primers
1227889	TTAAAAAAATATTAAAATTATAATAAAAAAAGA	Design primers
1233023	AATTGTGAACTGTGAATCGTGAACTGTG	Design primers
1259121	ATTAT-ATAAT-ATAAT-ATTAT-ATTAT	Design primers
1300702	TTAAGTGAACTTATATCAGATTTAAGTGAATTTGCATCGGATCTAAATGAACTTATATTAGAG	Design primers
1300889	AATATAATAACATATACTATTATATTATAT	Design primers
1301052	CTAAAAAA-TTAAAAAA-TTAAAAAA	Design primers
1415749	GTGGCTCAAATAATGGTGGAGGCTCAAATAACGGTGGAGGCTCAAATAACGGAG	Design primers
1471706	AAGATG-AAGATG-AGGATG-AAGATA	Design primers
1667242	AAATATCAATATAAACATAATTAT	Design primers
1717206	ACCGGAAATACCGGAAACACCGGTAATACAGGAAAT	Design primers
1731160	AATATTAAAATTACTATTAAAATT	Design primers
1784881	TATAA-TATAA-TATAA-TAAAA-TATTA	Design primers
1849158	TAATTAATAGTTAATAATTAATAATTTA	Design primers
1926066	CATTG-AATTA-CATAA-AATTA-AATTG-CATTA	Design primers
1935039	ATAATTATATTTATCATTATCATT	Design primers
1973763	ATTTTGTCCCAACTTTGTCCTATTTTTGTCTCAAATTTGTCTCATTTTTGTCCTATTTTTGTCTCA	Design primers
2042096	ATTTTGTCCCAACTTTGTCCTATTTTTGTCTCAAATTTGTCTCATTTTTGTCCTATTTTTGTCTCA	Design primers
2119207	CTTACCTTCTTTTCTACCTTCTTTTCTGCCTTCTTTTCTACCTTCTTTTCTACCTTCTTTTCTACCCTCTCT	Design primers
2154278	CAATTCACGATTCACAGTTCACAATTCA	Design primers
2157793	CTTTTTCTTCTTCCTTTTCTTCTT	Design primers
2182341	CAATTCACAATTTACAGTTCATAATTCA	Design primers
2291583	CTTTTTTTCTTCTTTTTATCTGCAATTTTTCTT	Design primers
2316562	TATATAAAGATTTTATAAAGATTTTATAAATAT	Design primers
2403777	AAAATCAAAAACACAATCAAAATC	Design primers
2410362	TC-TT-TC-TA-TT-TC-TC-TT-TC-TT-TT-TC	Design primers
2438947	CAATTCA-CAATTCA-CAATTTA-CAGTTCA	Design primers
2507053	CTCCTGTTGCTCCCGTTGCTCCGGTTG	Design primers
2507521	CTCCTGTTG-CTCCTGTTG-GTCCTGTTG	Design primers
2507854	CTCCCGTTG-CTCCGGTTG-CTCCCGTGT-CTCCTGTTG-CTCCTGTTG-CTCCTGTTG	Design primers
2507952	TCTCCTGTTGCTCCCGTTGCTCCTGTATCTCCCGTTGCTCCTGTTGGGCCCGTTTCTCCCGTTGCCCCAGTT	Design primers
2597836	CACAAGTTATCAACAACTTATCCACAGGTTATC	Design primers
2611475	TACTGCAACTGCAACTGCTATTGC	Design primers
2626296	TTATTTTATCTGATTTGATTTTATA	Design primers
2725392	GTATGCCAAACTGTGCCAAAGTGTGCCAAC	Design primers
2817890	TAAATATAAGTATAATTATTAATA	Design primers
2819444	ATGCCTAATTCTAACAATATGATGCCTAATTCCAATAACATGATGCCCAACTCTAATAAAATGATGCCTAATTCTAACAATACG	Design primers
2953168	TAATCCTTATA-TAATCCTTATA-TAATTATTATA	Design primers
2987298	AATCTCTTAATCTCATAATATCTT	Design primers
2994911	ATACCAAATTCTATAATAAATTCTATAACAAATCCT	Design primers
3035265	CGA-TTA-TTA-TGA-CGA-TTA-CTA-TGA-TGA-TTA-TGA-TGA	Design primers
3081969	CTTCTTCTCTCCCTTCTTTTCTTCCTTCCTCTCTCC	Design primers
3083319	TTATTTTAATGTATTTAATTATATT	Design primers
3100070	AAATAATTTATAATAGTTTAAAATAAATTC	Design primers
3115434	AATTCACAATGCACAATTCACGATTCAC	Design primers
3143130	TTATAATGTAATATTATGTATTATTATATA	Design primers
3167964	TATATAATATATATTTTATAATATATAC	Design primers
3170349	CTACAC-CTACAC-CTGCAC-CAACAC-CAACAC	Design primers
3194519	TT-TC-TT-TT-GC-TT-TT-TC-TT-TT-TG-TT	Design primers
3219392	TCTATTTTTTTGTATTTTTATCGATATTTT	Design primers
3346316	ATTTTGTCCCAACTTTGTCCTATTTTTGTCTCAAATTTGTCTCATTTTTGTCCTATTTTTGTCTCA	Design primers
3395948	CCTTTTCAAATTATATTTTTTTAAATTATAAATTTACAAATTATA	Design primers
3478195	TTAATTAATCAATTAATTGATTAA	Design primers
3494889	ATCCACAAGTTATCAACAACTTATCCACAGGTT	Design primers
3531531	AATATATTATACTATAATACCATAT	Design primers
3759873	TTTATATTATTTTTATTATTTATATTT	Design primers
3774397	AATATAATAAAAAATAATAAAATAG	Design primers
3876090	TATTTTATTCTTTTTCATTTCATTT	Design primers
3901622	CAAGCTTGCATTAACCTTGCATTAACCTTGCAT	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

34250

TTTTTGAATCTTTTAGAAGCTTTTTTAATA