Microsatellites /Tandem Repeats database

Genome: Burkholderia cenocepacia MC0-3 chromosome 1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
163496CACGAC-CACGAC-CACGAC-CACGAC-CACGAC-CACGAC-CACGAC-CACGACDesign primers
175554GTGTTTCG-GTGTTTCG-GTGTTTCG-GTGTTTCGDesign primers
175587TGTTTCGA-TGTTTCGA-TGTTTCGA-TGTTTCGA-TGTTTCGA-TGTTTCGA-TGTTTCGA-TGTTTCGA-TGTTTCGA-TGTTTCGA-TGTTTCGA-TGTTTCGA-TGTTTCGADesign primers
193840GGCTCGC-GGCTCGC-GGCTCGC-GGCTCGCDesign primers
193881GCCCAA-GCCCAA-GCCCAA-GCCCAA-GCCCAA-GCCCAA-GCCCAA-GCCCAADesign primers
193950CCCGGCT-CCCGGCT-CCCGGCT-CCCGGCT-CCCGGCT-CCCGGCT-CCCGGCTDesign primers
254291CAAGCAC-CAAGCAC-CAAGCAC-CAAGCAC-CAAGCAC-CAAGCAC-CAAGCAC-CAAGCACDesign primers
256104CCGGCAACCGC-CCGGCAACCGC-CCGGCAACCGC-CCGGCAACCGC-CCGGCAACCGC-CCGGCAACCGCDesign primers
256171CGGCAACCACC-CGGCAACCACC-CGGCAACCACCDesign primers
571223AACGCACGC-AACGCACGC-AACGCACGCDesign primers
571405CACCGATC-CACCGATC-CACCGATCDesign primers
879887CGCCAA-CGCCAA-CGCCAA-CGCCAA-CGCCAA-CGCCAA-CGCCAA-CGCCAA-CGCCAADesign primers
968950TGATCG-TGATCG-TGATCG-TGATCG-TGATCG-TGATCG-TGATCG-TGATCGDesign primers
1152323CCGCCGCCC-CCGCCGCCC-CCGCCGCCCDesign primers
1181203GCTGACG-GCTGACG-GCTGACG-GCTGACGDesign primers
1246283GGACGGCG-GGACGGCG-GGACGGCG-GGACGGCGDesign primers
1246316GACAACGG-GACAACGG-GACAACGG-GACAACGG-GACAACGGDesign primers
2852219GGTACTTCGGGTGGT-GGTACTTCGGGTGGT-GGTACTTCGGGTGGT-GGTACTTCGGGTGGTDesign primers
2852378GGTGGCGGTACTTCC-GGTGGCGGTACTTCC-GGTGGCGGTACTTCC-GGTGGCGGTACTTCCDesign primers
2852749CGGTGG-CGGTGG-CGGTGG-CGGTGG-CGGTGG-CGGTGGDesign primers
2852815TGGCGGCGG-TGGCGGCGG-TGGCGGCGGDesign primers
2852870GGCGGT-GGCGGT-GGCGGT-GGCGGT-GGCGGT-GGCGGT-GGCGGT-GGCGGT-GGCGGTDesign primers
3328467CCGCCTT-CCGCCTT-CCGCCTT-CCGCCTT-CCGCCTTDesign primers
3328514TTCCGCT-TTCCGCT-TTCCGCT-TTCCGCT-TTCCGCTDesign primers
3366489GGTGC-GGTGC-GGTGC-GGTGC-GGTGC-GGTGCDesign primers
3366550GCTTGCC-GCTTGCC-GCTTGCC-GCTTGCCDesign primers
3388575GCCTGCTACTT-GCCTGCTACTT-GCCTGCTACTTDesign primers

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