Microsatellites /Tandem Repeats database

Genome: Akkermansia muciniphila ATCC BAA-835

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
84013TCCATGC-AGGAAGC-AGGAAGC-AGGAAGC-AGGAAGC-AGGAAGC-AGGAAGC-AGGAAGC-AGGAAGC-AGGAAGC-AGGAAGC-AGGAAGC-AGGAAGC-AGGAAGC-AGGAAGC-AGGAAGC-AGGAAGC-AGGAAGC-AGGAAGC-AGGAAGC-AGGAAGC-AGGAAGC-AGGAAGC-AGGAAGC-AGGAAGC-AGGAAGC-AGGAAGCDesign primers
225438CTTATTTTTTCCTTATGATTTCCCCATTTTTTCDesign primers
375205CGCCAT-CGCCAT-CGGCAT-CGCCCTDesign primers
419880GCATCACCATCAGCGTCAACATCADesign primers
1170759CATTTTTTATGATTTTTTGTCATCTTTGATDesign primers
1203942AGAACATGAAGAACATGGAGAACCTGADesign primers
1335044CCGGCAGGAGCG-GAGGCAGGAGCG-GAGGCAGGAGCGDesign primers
1375061GTGCTGGTGCCGGTGTTGGTGCTGDesign primers
1595521TAAAGCCCCAAATA-TAAAGCCCCAAATA-TAAAGCTCCAGATADesign primers
1640644CGGAAA-CGGAGA-CGGAGA-CGGAGA-CGGAGADesign primers
1684927CATGGGCGGCATGGGAGGAATGGGCGGDesign primers
1723012CTTCCGCCG-CTTCCGCCG-CTTCCGCAGDesign primers
1773255CAG-CAG-GAG-AAG-CAG-GAG-AAG-CAG-GAGDesign primers
1934735AGACGAAGAAGAAGGCGAAGAAGADesign primers
1996542GGATTTTCGGATTTTTTGATTTTCDesign primers
2164743TTATCCTTGTCT-TGGTCCTTGTCT-TGGTCCTTGTCT-TGGTCCTTGTCTDesign primers
2164792GGTCCTTGTTCT-GGTCCTTGTTCT-GGTCCTTGTTCT-GGTCCTTGTTCT-GGTCCTTGTTCT-GGTCCTTGTTCT-GGTCCTTGTTCT-GGTCCTTGTTCT-GGTCCTTGTTCT-GGTCCTTGTTCT-GGTCCTTGTTCT-GGTCCTTGTTCT-GGTCCTTGTTCT-GGTCCTTGTTCT-GGTCCTTGTTCT-GGTCCTTGTTCT-GGTCCTTGTTCT-GGTCCTTGTTCT-GGTCCTTGTTCT-GGTCCTTGTTCT-GGTCCTTGTTCT-GGTCCTTGTTCT-GGTCCTTGTTCT-GGTCCTTGTTCTDesign primers
2487169CCACACTGACCACGCTGACCACATTGADesign primers
2572551CCGGAACCGGAGCCTGAACCGGAGDesign primers

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