Microsatellites /Tandem Repeats database

Genome: Chlorobium limicola DSM 245

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
78350GGTAGTG-GGTAGTG-GGTAGTG-GGTAGTG-GGTAGTG-GGTAGTGDesign primers
118275CCGCCTA-CCGCCTA-CCGCCTA-CCGCCTA-CCGCCTA-CCGCCTA-CCGCCTA-CCGCCTA-CCGCCTA-CCGCCTA-CCGCCTA-CCGCCTA-CCGCCTADesign primers
163844CTACTGA-CTACTGA-CTACTGA-CTACTGA-CTACTGA-CTACTGA-CTACTGA-CTACTGA-CTACTGA-CTACTGA-CTACTGADesign primers
336507GATCAGACG-GATCAGACG-GATCAGACGDesign primers
363799AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTGDesign primers
414587TGCTCCGGTCCGGAGCTTGGA-TGCTCCGGTCCGGAGCTTGGA-TGCTCCGGTCCGGAGCTTGGADesign primers
506147AAGTAG-AAGTAG-AAGTAG-AAGTAGDesign primers
507546AAGTAG-AAGTAG-AAGTAG-AAGTAGDesign primers
566136GGGCGGCAT-GGGCGGCAT-GGGCGGCATDesign primers
716893TCCCTAA-TCCCTAA-TCCCTAA-TCCCTAADesign primers
736039AGTGGGC-AGTGGGC-AGTGGGC-AGTGGGCDesign primers
736076AGTGGGT-AGTGGGT-AGTGGGT-AGTGGGT-AGTGGGTDesign primers
736141AGTGGGT-AGTGGGT-AGTGGGT-AGTGGGT-AGTGGGT-AGTGGGTDesign primers
736184GTGGGCA-GTGGGCA-GTGGGCA-GTGGGCA-GTGGGCA-GTGGGCA-GTGGGCADesign primers
788580CCCAAGTTT-CCCAAGTTT-CCCAAGTTTDesign primers
1012677TCCCTAA-TCCCTAA-TCCCTAA-TCCCTAADesign primers
1032190AGCAATG-AGCAATG-AGCAATG-AGCAATG-AGCAATG-AGCAATG-AGCAATG-AGCAATGDesign primers
1156019GTGGGCTGAAGATTGTGGGCG-GTGGGCTGAAGATTGTGGGCG-GTGGGCTGAAGATTGTGGGCG-GTGGGCTGAAGATTGTGGGCGDesign primers
1174126CGGCAGG-CGGCAGG-CGGCAGG-CGGCAGGDesign primers
1181452GTGGGTA-GTGGGTA-GTGGGTA-GTGGGTA-GTGGGTADesign primers
1194157GGCTCCGGC-GGCTCCGGC-GGCTCCGGCDesign primers
1572556TGACTTGCCCTG-TGACTTGCCCTG-TGACTTGCCCTG-TGACTTGCCCTG-TGACTTGCCCTGDesign primers
1607905TACCCAC-TACCCAC-TACCCAC-TACCCACDesign primers
1607942CCCACTG-CCCACTG-CCCACTG-CCCACTG-CCCACTGDesign primers
1608019CCCACTG-CCCACTG-CCCACTG-CCCACTG-CCCACTG-CCCACTG-CCCACTG-CCCACTG-CCCACTG-CCCACTG-CCCACTG-CCCACTGDesign primers
2041759TGGGTAC-TGGGTAC-TGGGTAC-TGGGTAC-TGGGTAC-TGGGTAC-TGGGTAC-TGGGTAC-TGGGTAC-TGGGTACDesign primers
2042025GCTCATTGCTCATCGCTCATT-GCTCATTGCTCATCGCTCATT-GCTCATTGCTCATCGCTCATTDesign primers
2042130GCTCATT-GCTCATT-GCTCATT-GCTCATTDesign primers
2042165GCTCATTGCTCATCGCTCATT-GCTCATTGCTCATCGCTCATT-GCTCATTGCTCATCGCTCATT-GCTCATTGCTCATCGCTCATTDesign primers
2042277GCTCATT-GCTCATT-GCTCATT-GCTCATT-GCTCATT-GCTCATT-GCTCATT-GCTCATT-GCTCATT-GCTCATTDesign primers
2051656CACAGCC-CACAGCC-CACAGCC-CACAGCC-CACAGCCDesign primers
2051693CACAGCC-CACAGCC-CACAGCC-CACAGCC-CACAGCC-CACAGCC-CACAGCCDesign primers
2053078GGCAGAA-GGCAGAA-GGCAGAA-GGCAGAA-GGCAGAADesign primers
2053232CTCATTG-CTCATTG-CTCATTG-CTCATTG-CTCATTGDesign primers
2053335CTCATCG-CTCATCG-CTCATCG-CTCATCGDesign primers
2058017CCACAAT-CCACAAT-CCACAAT-CCACAATDesign primers
2066141GCTCATT-GCTCATT-GCTCATT-GCTCATTDesign primers
2081062CTCATTG-CTCATTG-CTCATTG-CTCATTGDesign primers
2083888GCTCATC-GCTCATC-GCTCATC-GCTCATC-GCTCATCDesign primers
2083951GCTCATT-GCTCATT-GCTCATT-GCTCATTDesign primers
2124044TGCATTATCCGATGCATTGTCCGA-TGCATTATCCGATGCATTGTCCGA-TGCATTATCCGATGCATTGTCCGADesign primers
2124120TTGTCCGATGCG-TTGTCCGATGCG-TTGTCCGATGCGDesign primers
2125888GTAGCCA-GTAGCCA-GTAGCCA-GTAGCCA-GTAGCCA-GTAGCCA-GTAGCCA-GTAGCCA-GTAGCCADesign primers
2361188GCGGTGA-GCGGTGA-GCGGTGA-GCGGTGA-GCGGTGA-GCGGTGA-GCGGTGA-GCGGTGA-GCGGTGA-GCGGTGA-GCGGTGA-GCGGTGA-GCGGTGA-GCGGTGA-GCGGTGA-GCGGTGADesign primers
2405825CATCACT-CATCACT-CATCACT-CATCACTDesign primers

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