Microsatellites /Tandem Repeats database

Genome: Chlorobium limicola DSM 245

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
78349CGGTAGT-GGGTAGT-GGGTAGT-GGGTAGT-GGGTAGT-GGGTAGTDesign primers
78392GATAGTGGGTAGTGGGTAGTGGGTAGTGGATAGTGGGTAGTGDesign primers
78435GTAGTGG-ATAGTGG-ATAGTGG-GTAGTGG-ATAGTGG-GTAGTGG-GTAGTGG-GTAGTGG-ATAGTGG-ATAGTGG-GTAGTGG-ATAGTGGDesign primers
118271CTTTCCG-CCTACCG-CCTACCG-CCTACCG-CCTACCG-CCTACCG-CCTACCG-CCTACCG-CCTACCG-CCTACCG-CCTACCG-CCTACCGDesign primers
163840CTACCTA-CTGACTA-CTGACTA-CTGACTA-CTGACTA-CTGACTA-CTGACTA-CTGACTA-CTGACTADesign primers
336507GATCAGACG-GATCAGACG-GATCAGACGDesign primers
363799AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTGDesign primers
414585ATTGCTCCGGTCCGGAGCTTG-GATGCTCCGGTCCGGAGCTTG-GATGCTCCGGTCCGGAGCTTGDesign primers
506147AAGTAG-AAGTAG-AAGTAG-AAGTAGDesign primers
507546AAGTAG-AAGTAG-AAGTAG-AAGTAGDesign primers
566136GGGCGGCAT-GGGCGGCAT-GGGCGGCATDesign primers
716893TCCCTAA-TCCCTAA-TCCCTAA-TCCCTAADesign primers
735843AGTGGGTTGTGGGCAGTGGGCAGTGGGTAGTGGGTAGTGGGCAGTGGGTAGTGGGCAGTGGGTAGTGGGTAGTGGGCAGTGGGTDesign primers
735945GGTAGTGGGATGTGGGTAGTGGGTTGTGGGTAGTGGGATGTGDesign primers
736019GTGGGCAGTGGGCAGTGGGTAGTGGGCAGTGGGCAGTGGGCAGTGGGCAGTGGGTADesign primers
736076AGTGGGT-AGTGGGT-AGTGGGT-AGTGGGT-AGTGGGTDesign primers
736140GAGTGGG-TAGTGGG-TAGTGGG-TAGTGGG-TAGTGGG-TAGTGGGDesign primers
736183AGTGGGC-AGTGGGC-AGTGGGC-AGTGGGC-AGTGGGC-AGTGGGC-AGTGGGCDesign primers
788580CCCAAGTTT-CCCAAGTTT-CCCAAGTTTDesign primers
1012677TCCCTAA-TCCCTAA-TCCCTAA-TCCCTAADesign primers
1032189TAGCAAT-GAGCAAT-GAGCAAT-GAGCAAT-GAGCAAT-GAGCAAT-GAGCAAT-GAGCAATDesign primers
1156015TGCTGTGGGCTGAAGATTGTG-GGCGGTGGGCTGAAGATTGTG-GGCGGTGGGCTGAAGATTGTG-GGCGGTGGGCTGAAGATTGTGDesign primers
1174126CGGCAGG-CGGCAGG-CGGCAGG-CGGCAGGDesign primers
1181452GTGGGTA-GTGGGTA-GTGGGTA-GTGGGTA-GTGGGTADesign primers
1194157GGCTCCGGC-GGCTCCGGC-GGCTCCGGCDesign primers
1572221TGGTGCCGTCTTGGTACCGTCTTGGTGCCGTCTDesign primers
1572555CTGACTTGCCCT-GTGACTTGCCCT-GTGACTTGCCCT-GTGACTTGCCCT-GTGACTTGCCCTDesign primers
1607882ACTACCCACTACCCATTACCCATTACCCACTACCCACTACCCACTACCCACTGCCCACTACCCDesign primers
1607946CTGCCCA-CTGCCCA-CTGCCCA-CTGCCCA-CTGCCCADesign primers
1608017TACCCAC-TGCCCAC-TGCCCAC-TGCCCAC-TGCCCAC-TGCCCAC-TGCCCAC-TGCCCAC-TGCCCAC-TGCCCAC-TGCCCAC-TGCCCACDesign primers
2041756GAGTGGG-TACTGGG-TACTGGG-TACTGGG-TACTGGG-TACTGGG-TACTGGG-TACTGGG-TACTGGGDesign primers
2041996TGCTCATCGCTCATTGCTCAT-TGCTCATCGCTCATTGCTCAT-CGCTCATTGCTCATTGCTCAT-CGCTCATTGCTCATTGCTCAT-CGCTCATTGCTCATTGCTCAT-TGCTCATCGCTCATTGCTCAT-TGCTCATCGCTCATTGCTCAT-TGCTCATTGCTCATTGCTCATDesign primers
2042165GCTCATTGCTCATCGCTCATT-GCTCATTGCTCATCGCTCATT-GCTCATTGCTCATCGCTCATT-GCTCATTGCTCATCGCTCATTDesign primers
2042250CTCATCGCTCATTGCTCATCGCTCATCGCTCATTGCTCATTGCTCATTGCTCATTGCTCATTGCTCATTGCTCATTGCTCATTGCTCATTGCTCATTGDesign primers
2042593CGCTCAT-CGCTCAT-TGCTCAT-TGCTCAT-CGCTCAT-CGCTCAT-TGCTCAT-CGCTCAT-CGCTCATDesign primers
2051395AGCCCACAGCTCACAGCTCACAGCTCACAGCCCACAGCCCACDesign primers
2051449CACAGCCCACAGCTCACAGCCCACAGCCCACAGCCAACAGCTCACAGCCCACAGCTCACAGCCCACAGCCDesign primers
2051552AGCTCACAGCCCACAGCCCACAAGCCCACAGCCCACAGCCCACAAGCCCACAGCCCACAGCTCACADesign primers
2051619CTCACAG-CTCACAG-CCCACAG-CTCACAG-CCCACAG-CTCACAGDesign primers
2051662CCACAGC-CCACAGC-CCACAGC-CCACAGCDesign primers
2051691CACACAGCCCACAGCCCACAGCCCACAGCCCACAGCCCACAGCCCACAGCCCACAGCTCACAGCCCACAGCCCACAGCCCACAGCTCACAGCCCACAGCCCACAGCCCACAGCTCACAGCCCACAGDesign primers
2051818CCACAGCTCACAGCCCACAGCCCACAGCCCACAGCTCACAGCCCACAGCCCACAGCDesign primers
2053078GGCAGAA-GGCAGAA-GGCAGAA-GGCAGAA-GGCAGAADesign primers
2053232CTCATTG-CTCATTG-CTCATTG-CTCATTG-CTCATTGDesign primers
2053335CTCATCG-CTCATCG-CTCATCG-CTCATCGDesign primers
2058017CCACAAT-CCACAAT-CCACAAT-CCACAATDesign primers
2066141GCTCATT-GCTCATT-GCTCATT-GCTCATTDesign primers
2081062CTCATTG-CTCATTG-CTCATTG-CTCATTGDesign primers
2083881GCTCATT-GCTCATC-GCTCATC-GCTCATC-GCTCATC-GCTCATCDesign primers
2083945CTCATCGCTCATTGCTCATTGCTCATTGCTCATTGCTCATCGCTCATCGCTCATTGCTCATCADesign primers
2107872GAGCAATGAGCAAC-GAGCAATGAGCAAC-GAGCGATGAGCAAC-GAGCAATGAGCAACDesign primers
2124039TCAGCTGCATTATCCGATGCATTGTCCGATGCATTATCCGATGCATTGTCCGATGCATTATCCGATGCATTGDesign primers
2124112CCGATGCATTGT-CCGATGCGTTGT-CCGATGCGTTGT-CCGATGCGTTGTDesign primers
2125886AGGTAGC-CAGTAGC-CAGTAGC-CAGTAGC-CAGTAGC-CAGTAGC-CAGTAGC-CAGTAGC-CAGTAGCDesign primers
2126386TTGTCGGAGGCATTGTCTGACGCATTGTCCGATGCATTGTCTGACGCATTGTCCGATGCATTGTCTGACGCADesign primers
2361160GCAGTGGGCGGTGAGCGGTGA-GCAGTGGGCGGTGAGCGGTGA-GCGGTGAGCGGTGAGCGGTGA-GCGGTGAGCGGTGAGCGGTGA-GCGGTGAGCGGTGAGCGGTGA-GCGGTGAGCGGTGAGCGGTGADesign primers
2361307GCGGTGGGCGGTGAGCGGTGGGCAGTGAGCAGTGGGCGGTGA-GCGGTGAGCGGTGAGCGGTGGGCAGTGAGCAGTGGGCGGTGA-GCGGTGAGCGGTGAGCGGTGGGCAGTGAGCAGTGGGCGGTGA-GCAGTGGGCGGTGADesign primers
2405825CATCACT-CATCACT-CATCACT-CATCACTDesign primers
2698547GGGGTACATGTGCGGTACATGTGCGGTACATGTDesign primers

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