Microsatellites /Tandem Repeats database

Genome: Chlorobium limicola DSM 245

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
78342CGGTAGCCGGTAGTGGGTAGTGGGTAGTGGGTAGTGGGTAGTGGGTAGTGGATAGTGGGTAGTGGGTAGTGGGTAGTGGATAGTGGGTAGTGGGTAGTGGATAGTDesign primers
78448GATAGTGGGTAGTGGATAGTGGGTAGTGGGTAGTGGGTAGTGGATAGTGGATAGTGGGTAGTGGATAGTGGGTAGTGDesign primers
118269TTCTTTC-CGCCTAC-CGCCTAC-CGCCTAC-CGCCTAC-CGCCTAC-CGCCTAC-CGCCTAC-CGCCTAC-CGCCTAC-CGCCTAC-CGCCTACDesign primers
163836TCTTCTA-CCTACTG-ACTACTG-ACTACTG-ACTACTG-ACTACTG-ACTACTG-ACTACTG-ACTACTG-ACTACTG-ACTACTG-ACTACTGDesign primers
275410ATGTTGTTGATATAATGTTGATAACTTGTTGATDesign primers
277543GTGGGCGGTTGGCGGTGTGCGGTGAGCGDesign primers
277627TGTCCATGTCTGTCGGTGTCCGTCCTTGTCDesign primers
316892GG-TT-TT-TT-TT-GT-TT-TT-TT-GT-TT-TT-TT-TDesign primers
336496CGGCTCAGGCAGATCAGACGGATCAGACGGATCAGACGGATCAGGCAGATCAGGDesign primers
363763GGCGGTG-AGCGGTG-GGCGGTG-AGCGGTG-AGCGGTGDesign primers
363799AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTG-AGCGGTGDesign primers
414581CATAATTGCTCCGGTCCGGAGCTTGGATGCTCCGGTCCGGAGCTTGGATGCTCCGGTCCGGAGDesign primers
460438GCGGCGGTGGCGGCGGTTTCGGCGGTGDesign primers
506144TAAAAGTAGAAGTAGAAGTAGAAGTAGAAGTAAATGDesign primers
507543TAAAAGTAGAAGTAGAAGTAGAAGTAGAAGTAAATGDesign primers
566135CGGGCGGCA-TGGGCGGCA-TGGGCGGCADesign primers
583668GAAGCTCCTGCACCTGAAGCACCTGCAACCGAAGAGGCTGCACCTDesign primers
583738CAGAAGCAGCACCTGCAACCGAAGAAGCAGCTCCTGCAGCTGGCGAAGCAGCACCTGCAACAGDesign primers
583805AGCACCTGCCGAAGCTCCTGCTGAAGCACCTGCAAADesign primers
590560GCGTCTTGAGGCTCAACGTCTTGAAGCTCAGAGACTCGAGGCTCADesign primers
592655CCGTAAG-CAGTAAG-CAGTAAG-CAGTAAGDesign primers
698278AATTCAAGTCAATTTAATTACATTCDesign primers
716892TTCCCTA-ATCCCTA-ATCCCTA-ATCCCTADesign primers
735826GGCAGTGGGATGTGGGTAGTGGGTTGTGGGCAGTGGGCAGTGDesign primers
735869GTAGTGG-GTAGTGG-GCAGTGG-GTAGTGG-GCAGTGG-GTAGTGG-GTAGTGG-GCAGTGG-GTAGTGG-GTAGTGG-GTAGTAG-GTAGTGGDesign primers
735954ATGTGGGTAGTGGGTTGTGGGTAGTGGGATGTGGGTAGTGGGDesign primers
735997AGTGGGATGTGGGTAGTGGGTTGTGGGCAGTGGGCAGTGGGTDesign primers
736040GTGGGCA-GTGGGCA-GTGGGCA-GTGGGCA-GTGGGTADesign primers
736076AGTGGGT-AGTGGGT-AGTGGGT-AGTGGGT-AGTGGGT-AGTGGGC-AGTGGGC-AGTGGGC-AGTGGGTDesign primers
736140GAGTGGG-TAGTGGG-TAGTGGG-TAGTGGG-TAGTGGG-TAGTGGG-TAGTGGG-CAGTGGG-CAGTGGG-CAGTGGG-CAGTGGG-CAGTGGG-CAGTGGG-CAGTGGGDesign primers
736239TGTGGGTAGTGGGTAGTGGGTAGTGGGTTGTGGTTDesign primers
788578TCCCCAAGTTTCCCAAGTTTCCCAAGTDesign primers
999180TCAGTAGTCGGTAGCCAGTAGCCAGTAGDesign primers
1012676TTCCCTA-ATCCCTA-ATCCCTA-ATCCCTADesign primers
1031840AGTCGGT-AGTCGGT-AGCCGGT-AGTCGGGDesign primers
1031981AGCGATG-AGCAATG-AGCAATG-AGCGATG-AGCAATGDesign primers
1032185GTAATAG-CAATGAG-CAATGAG-CAATGAG-CAATGAG-CAATGAG-CAATGAG-CAATGAG-CAATGAGDesign primers
1097871TCCTGCTCCTGTTTCTGCTTCTGCDesign primers
1156012TTTTGCTGTGGGCTGAAGATT-GTGGGCGGTGGGCTGAAGATT-GTGGGCGGTGGGCTGAAGATT-GTGGGCGGTGGGCTGAAGATTDesign primers
1156132GTAGCCGGTAGTCGGTAGCCAGTAGCCGDesign primers
1174123AGTCGGC-AGGCGGC-AGGCGGC-AGGCGGCDesign primers
1174155GGTAGTGGGTAGTAGGGAGTGGGTAGTGDesign primers
1181421ATGGGGT-ATTGGGT-ATTGGGT-ATTGGGTDesign primers
1181451TGTGGGT-AGTGGGT-AGTGGGT-AGTGGGT-AGTGGGTDesign primers
1181510GTGTGGGTAGTGGGAGTGGGTAGTAGGAGTGGGGAGTGGDesign primers
1194126CGGTGGTTCCGGCGGTTCCGGTGGCTCCGGTGGCTCDesign primers
1198337TGCGGTCCCAGTTACGGTCTCTGTGGTCCCAATCGCGGTCTCTGCGGTCCCAATCGCGGTCACDesign primers
1524594CCGGCTACCGACTACCGACTACCGGCTTCCAGCTADesign primers
1535420AGTAGCCGGTAGCCGGTAGCCAGTATCCDesign primers
1556707CCGCCCACCGCCAACGGCCCACCGCCCADesign primers
1572194CTACCTGGTGCCGACCTGATGCAGACCTGGTGCDesign primers
1572228GTCTTGGTACCGTCTTGGTGCCGTCTTGGTTCCDesign primers
1572551CTGCCTGACTTG-CCCTGTGACTTG-CCCTGTGACTTG-CCCTGTGACTTG-CCCTGTGACTTG-CCCTGTGACTTGDesign primers
1597846CCAGCCATCCAGCTATCCAGCCAGDesign primers
1607879TCAACTA-CCCACTA-CCCATTA-CCCATTA-CCCACTA-CCCACTA-CCCACTA-CCCACTG-CCCACTADesign primers
1607943CCACTGC-CCACTGC-CCACTGC-CCACTGC-CCACTGCDesign primers
1607979CATTACC-CACTACC-CACTACC-CATTACC-CATTACC-CATTACCDesign primers
1608022ACTGCCC-ACTGCCC-ACTGCCC-ACTGCCC-ACTGCCC-ACTGCCC-ACTGCCC-ACTGCCC-ACTGCCC-ACTGCCC-ACTGCCC-ACTGCCCDesign primers
1683005CACCGTCACAGTCAACGTCACCATDesign primers
1907604ACAGCTCACCGCTCACCGCCCACAGCCCACTGCTCACCGCCCACAGCCCACAGCCCACAGCCCACTGCTCACCGCCCACAGTCCDesign primers
1942293GATGGCTT-GATGGCTT-GATAGCTTDesign primers
1961839TTCTTCC-CTCATTG-CTCATCG-CTCATCG-CTCATTG-CTCATTG-CTCATCG-CTCATCG-CTCATCGDesign primers
1984452CGGCCTTGGCCTCGGCTTCGGTCTDesign primers
2041754TCGAGTG-GGTACTG-GGTACTG-GGTACTG-GGTACTG-GGTACTG-GGTACTG-GGTACTG-GGTACTGDesign primers
2041995TTGCTCATCGCTCATTGCTCATTGCTCATCGCTCATTGCTCATCGCTCATTGCTCATTGCTCATCGCTCATTGCTCATTGCTCATCGCTCATTGCTCATTGCTCATTGCTCATCGCTCATTGCTCATTGCTCATCGCTCATTGCTCATTGCTCATTGCTCATTGCTCATCGCTCATTGCTCATCGCTCATTGCTCATTGCTCATCGCTCATTGCTCATTGCTCATCGCTCATTGCTCATTGCTCATCGCTCATTGCTCATCGCTCATTGCTCATCGCTCATCGCTCATTGCTCATTGCTCATTGCTCATTGCTCATTGCTCATTGCTCATTGCTCATTGCTCATTGCTCADesign primers
2042592TCGCTCA-TCGCTCA-TTGCTCA-TTGCTCA-TCGCTCA-TCGCTCA-TTGCTCA-TCGCTCADesign primers
2051364AGCCCACA-AGCCCACA-AGCTCACADesign primers
2051394AAGCCCA-CAGCTCA-CAGCTCA-CAGCTCA-CAGCCCA-CAGCCCADesign primers
2051444AAGCTCACAGCCCA-CAGCTCACAGCCCA-CAGCCCACAGCCAA-CAGCTCACAGCCCA-CAGCTCADesign primers
2051545AGCCCACAGCTCACAGCCCACAGCCCACDesign primers
2051595AAGCCCA-CAGCCCA-CAGCTCA-CAGCTCA-CAGCTCA-CAGCCCA-CAGCTCA-CAGCCCA-CAGCTCA-CAGCCCA-CAGCCCA-CAGCCCADesign primers
2051689CCCACAC-AGCCCAC-AGCCCAC-AGCCCAC-AGCCCAC-AGCCCAC-AGCCCAC-AGCCCAC-AGCTCAC-AGCCCAC-AGCCCAC-AGCCCAC-AGCTCAC-AGCCCAC-AGCCCAC-AGCCCAC-AGCTCAC-AGCCCAC-AGCCCAC-AGCTCAC-AGCCCAC-AGCCCAC-AGCCCAC-AGCTCAC-AGCCCAC-AGCCCAC-AGCTCACDesign primers
2053077GGGCAGA-AGGCAGA-AGGCAGA-AGGCAGA-AGGCAGADesign primers
2053229TCCCTCA-TTGCTCA-TTGCTCA-TTGCTCA-TTGCTCA-TTGCTCADesign primers
2053332TCCCTCA-TCGCTCA-TCGCTCA-TCGCTCADesign primers
2053424CTCATCG-CTCATTG-CTCATTG-CTCATCGDesign primers
2055305CTCATCG-CTCATTG-CTCATTG-CTCATCGDesign primers
2055414TCGCTCATTGCTCATTGCTCTTTGCTCATCGCTCATTGCTACDesign primers
2058016CCCACAA-TCCACAA-TCCACAA-TCCACAADesign primers
2065957CTCATTG-CTCATCG-CTCATCG-CTCATCGDesign primers
2066047TCATCCC-TCATCGC-TCATCGC-TCATCGCDesign primers
2066139TCGCTCA-TTGCTCA-TTGCTCA-TTGCTCADesign primers
2080869TCTGGCTCGATAGCTTGATGGCTTGATAGCTTGATGGCTTGATAGCTTDesign primers
2081061ACTCATT-GCTCATT-GCTCATT-GCTCATTDesign primers
2081246CTCATCGCTCATCCCTCATCGCTCATCGDesign primers
2081312CCCTCAT-TGCTCAT-CGCTCAT-TGCTCAT-CGCTCAT-CGCTCATDesign primers
2083218CTCATCA-CTCATTG-CTCATTG-CTCATTG-CTCATCG-CTCATCGDesign primers
2083866CCCTCATCGCTCAT-TGCTCATTGCTCAT-CGCTCATCGCTCAT-CGCTCATCGCTCAT-CACTCTTCCCTCAT-CGCTCATCCCTCAT-CGCTCATTGCTCAT-TGCTCATTGCTCAT-TGCTCATCGCTCAT-CGCTCATTGCTCAT-CACTCATDesign primers
2084099CTCATCGCTCATTGCTCATCCCTCATCADesign primers
2107859AGCAATG-AGTTATG-AGCAATG-AGCAACG-AGCAATG-AGCAACG-AGCGATG-AGCAACG-AGCAATG-AGCAACG-AGCGATG-AGCAATG-AGCAACG-AGCTATG-AGCTATGDesign primers
2108421TCACTCATCCCTCATCGCTCATCGCTCADesign primers
2124037CATCAGCTGCATTATCCGATGCATTGTCCGATGCATTATCCGATGCATTGTCCGATGCATTATCCGATGCATDesign primers
2124110GTCCGATGCATTGTCCGATGCGTTGTCCGATGCGTTGTCCGATGCGTTGTCGGAGGCATTDesign primers
2125775GGTAGCC-AGTAGCC-GGTAGCC-GGTAGCCDesign primers
2125883AAGAGGT-AGCCAGT-AGCCAGT-AGCCAGT-AGCCAGT-AGCCAGT-AGCCAGT-AGCCAGT-AGCCAGTDesign primers
2126365TCGGAGGCGTTGTCCGACGCGTTGTCGGAGGCATTGDesign primers
2126402CTGACGCATTGTCCGATGCATTGTCTGACGCATTGTCCGATGCATTGTCTGACGCATTGTDesign primers
2317238AATTCGTGTAAATCCGTGGAAATTCGTGGGDesign primers
2361169GGTGAGC-GGTGAGC-AGTGGGC-GGTGAGC-GGTGAGC-GGTGAGC-GGTGAGC-GGTGAGC-GGTGAGC-GGTGAGC-GGTGAGC-GGTGAGC-GGTGAGC-GGTGAGC-GGTGAGC-GGTGAGC-GGTGAGC-GGTGAGC-GGTGAGC-AGTGGGC-GGTGGGC-GGTGAGC-GGTGGGC-AGTGAGC-AGTGGGC-GGTGAGC-GGTGAGC-GGTGAGC-GGTGGGC-AGTGAGC-AGTGGGC-GGTGAGC-GGTGAGC-GGTGAGC-GGTGGGC-AGTGAGC-AGTGGGC-GGTGAGC-AGTGGGC-GGTGAGCDesign primers
2367186GACTGACACGGACGGACACCGACAGACATGDesign primers
2370251CGGCCCACCGCCCACTGCCCACTGCCCADesign primers
2405823CACATCA-CTCATCA-CTCATCA-CTCATCADesign primers
2405883CCATTAC-CCATTAC-CCACTAC-CCATTACDesign primers
2630230ATCTATATATCTATACAACTATATDesign primers
2698533TGCGGGGTACA-TGCGGGGTACA-TGTGCGGTACA-TGTGCGGTACADesign primers
2730885TT-CT-TT-TT-CT-GT-TT-GT-TT-TT-CT-TTDesign primers

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