Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Burkholderia multivorans ATCC 17616 Tohoku

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
26318	GGTCGCGGTGGCTGTCGCGGTCGA	Design primers
82258	GCCGCGCGGCGGCGCGGCCGCGCG	Design primers
97914	CGCGAGCGCGCGTGCGAGCGCGAT	Design primers
107829	AGCCGGCGGGCCGGCGAGCCGCCG	Design primers
131016	CCCTTCACTTCCATTTCCTTCACTT	Design primers
144908	TGCCGCTGACGCTGCGGCCGCCGCTGCCGTTGCCGC	Design primers
156645	TCGTGGTCATGGTCGTGATCGTGG	Design primers
175284	GCTTGC-GCTTGC-GCCTGC-GTTTGC	Design primers
177966	CGTGTCGTGCGTTTCGTGCGTGTCGTC	Design primers
178670	GGG-CGG-CGG-CGG-GGG-CGG-CGG-CGG	Design primers
181281	CGACCG-CGACCG-CGAACG-CGACGG	Design primers
207895	CTCTG-CACTG-CACTG-CACTG-CACTG	Design primers
208920	GCGGCGCGCGACTGCGCGCGGCGGCGCGCC	Design primers
210171	GGCGCGGCACGGTGCGGCGCGGCAC	Design primers
248402	ACGCGCGGCACCACGCGGCACCACGCGGCA	Design primers
248440	CCGCGCGA-ACGCGCGA-ACGCGCGA-ACGCGCGA	Design primers
251902	CGCGGCGGCGCGGCGCCGCGGCAG	Design primers
275485	TGGGAGCGG-ACGAAGCGG-ACGAAGCGG-ACGAAGCGG-ACGAAGCGG-ACGAAGCGG-ACGAAGCGG-ACGAAGCGG	Design primers
275565	GGCGGAGCGGACGAGCGGACGAGCGGACGAGCGGACGAGCGGACAAGC	Design primers
275614	GACAAGCG-GACAAGCG-GACAAGCG-GACAAGCG-GACAAGCG-GACAAGCG-GACAAGCG-GACAAGCG-GACAAGCG-GACAAGCG-GACGAGCG-GACGAGCG-GACGAGCG	Design primers
275758	AAGCGGCCAAGAGCGGCCCAAAGCGGGCCA	Design primers
277473	CGCGCTCGCGTTCGCGCGCGAGCT	Design primers
402669	CTGAGCGCACGACGCGGCACTGCGCACGACGCGGCGCTGCGCACGACGCGG	Design primers
432282	TCGACGACGTCGACTACGTCGACGACA	Design primers
469822	CGGCGGCGACGGCGGCCGGGGCGG	Design primers
485477	CGGCTGCCAAGAAGGCTGCTGCGAAGAAGACCGTTGCGAAGAAGG	Design primers
485545	GCTGCAGTGAAGAAGGTTGCAGCCAAGAAGGTCGCGGTGAAGAAGGTTGCCGCGAAGAAG	Design primers
485612	CGGCGAAGAAGGCCGCTGCGAAGAAGGTTGCCGCGAAGAAGGCAG	Design primers
485663	CGAAGAAGGCCGCTGCGAAGAAGGTCGCAACGAAGAAGGTTGCAG	Design primers
485753	CGGCGAAGAAGGCCGCAGCGAAGAAGGTTGCAGCCAAGAAGGTCGCGACGAAGAAGGTCGCGGCGAAGAAGGCCG	Design primers
485879	CAGCGAAGAAGGCTGCGCCCGCCAAGAAGGCCGCGCCGGCGAAGAAGGCTGCTG	Design primers
520716	CCGTTATCTGCCGGTATCCGCCGGCATCTG	Design primers
560999	TGATCGCGATCGTGGTCGGGATCG	Design primers
594332	CGCTCGGGCTCGCGCTCGTGCTCG	Design primers
626731	GTGGCGCGCGGCCAGCGGTGCGCGGCCAGCGGCGCGCGGCGA	Design primers
721416	TCGTCGTCTTCGTCGCCGTGGTCG	Design primers
728194	CC-CC-GC-GC-CC-GC-GC-CC-GC-GC-CC-GC	Design primers
766993	GCGGTGCGGTTGGCGGCGCGGTTAGCGGTGCAGTGGGCGGTGCTGTCG	Design primers
783861	AGGCATTCAACGCATTCAACGCATTCA	Design primers
818242	TGATGA-TCGTGA-TCGTGA-TCGTGA-TCGTGA-TCGTGA	Design primers
818279	CGTGCG-AGTGCG-AGTGCG-AGTGCG	Design primers
867436	TCCTCTTCGTCGTCTTCGTCCTCTTCT	Design primers
884414	GGCGCGGCGGTGCGCGGCGTGCCGC	Design primers
920814	GCGGCTTCCGCGGCTTCGGCTGCTTCC	Design primers
930723	GGTCGAGATCGAGCTCGAGGCCGA	Design primers
932028	GGCCCGTGGGGCCCCTGGGGGCCGTGG	Design primers
932392	CGCGGGCGGACCGCCGCGGCCGGACCGCCGCGGCCGGTCCGC	Design primers
941848	ACGCCG-GCGCCG-GCGCCG-GCGCCG	Design primers
976242	GCATGGAACCGTGATCCATGCCGGCCATGGCGCCGTGATCCATCCCGGCCATGGAGCCGTGGTCCATCCCGG	Design primers
981953	CTGCCATTGCCACTGCCACTGCCT	Design primers
994828	CGGCACGCCGGGACGCCGGGACGC	Design primers
1064693	GCGCGGCACGTCGCGGCCCGGCGCG	Design primers
1091464	CCGTTCGGTCCGTTCGATGCGTTCGGT	Design primers
1096026	GCGCGCAGCGTGCGCAGCGCGGGCAGC	Design primers
1114871	GCC-GCG-ACG-GCC-GCG-GCG-GCG-GCG-ACG	Design primers
1115485	CCGGCGCGGGCGCCGGAGCGGGCG	Design primers
1134158	CCGGCAAGCCCTACCGGCAAGCCTAACCGGCGAGCCCAA	Design primers
1135306	TCGGCTTCGGTTTCCGCTGCGGCT	Design primers
1137988	GCTGCAGCGGCAGCTGCCGCTGCG	Design primers
1147460	GCGGCAGCCGCAGGGGCAGCGGCG	Design primers
1155440	CAGTGCGGTCAGTGCGGCTAGTGCGGT	Design primers
1164497	GGCGGGCGGCGTGCCGTCGGGCGGCGGTCCGTCGGGCGGCGAACCGTCGGGCGGCGTGCC	Design primers
1200996	GGCGAACCGGCCGGCGAGACGGCCGCCGAACCGACC	Design primers
1206639	GCGCTCGCGCGCGGGCTCGCGATC	Design primers
1220448	GTGGTGCGTCGCGATGCGTCGTGGTGCGCG	Design primers
1220496	GGCGCGGCGAGGCGATGCGGCGAGGCGGTGCGGCGAGGC	Design primers
1225875	GCGCCGCGAGCGGCGCGGCGACCGCCGCCGCGATCG	Design primers
1244129	CAAGAAACG-GAAGAAACG-GAAGAAACG-GAAGAAACG	Design primers
1272178	CCGGCG-CCGGCG-CGGGCG-CGGGCG-CGGGCG-CGGGCG	Design primers
1274322	GGCTCGGGATCGGCCTCGCGCTCG	Design primers
1349260	CGCGGCACGGCTCGGCGCGACGCCG	Design primers
1379861	GAACGGCTTGCCGAAGGGCTCGCCGAACGGCGCGCC	Design primers
1403265	CGCGCGAAC-GGCGCGAAC-GGCGCGAAC	Design primers
1408049	CGCCGCTCGTCGCGCTGATCGTCGTGCCGATCGTCG	Design primers
1433099	ATGCCGGGGCGCCGG-CCGCCGGGGCGCCGG-CCGCCGGGCCGCCGG	Design primers
1488154	GCGTTGGCATTGGCGTTGGCGTTC	Design primers
1493882	GACGGC-GACGGC-GGCGGC-GGCGGC	Design primers
1494547	CGCCCGCGGCCGCGCGCGTGCCCG	Design primers
1503836	CGCCTCACGTGC-GGCGTCCCATGC-GGCGTCCCATGC-GGCGTCCCATGC-GGCGTCCCGTGC-GGCGTCCCCTGC-GGCGTCCCGTGC-GGCGTCCCGTGC-GGCGTCCCGTGC-GGCGTCCCGTGC	Design primers
1503957	GCGGCCCATGCGGCGTCCCATGCGGCGTCCCCTGCGGCGTCCCGTGCGGCGTCCCCTGCGGCGTCCCGTGCGGCGTCCCGTGCGGCGTCCCGTGCGGCGGCCCATGCGGCGTCCCATGCGGCGTCCCGTGCGGCGTCCCGTGCGGCGGCCCATGCGGCGGCCCGTGCGGCGTCCCGTGCG	Design primers
1509025	CCAACTGGGTAAGCAAGTGGGTAATCAACTGGGTAA	Design primers
1510074	GCCAGAC-TCCAGAC-TCCAGAC-TCCAGAC	Design primers
1575645	GCCGAAGCAGCTGAAGCAGGCGAAGCA	Design primers
1606454	TGCCGCTCGTCGAACCGCTGGTGCTGCCGCTCGTCGAGCCGCTCGTGCTACCGCTGCTCGAGCCGCTGGTGC	Design primers
1606543	CCGGACGAACCCGACGAACCGGACGAG	Design primers
1684584	CAATGACGACGACAACGTCGACGACAACGTCGACGA	Design primers
1713624	GCTCGCGCTGCTCGCGCTCGTGACGCTCGCGCTGAAGCTGCTCGC	Design primers
1714204	CGCGCTCGCGCGCGCCCTCGCGGT	Design primers
1718962	CGCGCTGATCGCGATGATCGCGCTGTT	Design primers
1733099	CGCGCTCTCGCTCGTGCTCGCGAT	Design primers
1753356	GGCGCGCCGCGCGCGGCGCGCGGCGCGA	Design primers
1787831	ACGGTGCGGCCGGCGTAGGTGCGACCGGCGTAGGTGCGGCCGACG	Design primers
1794355	CGC-CGT-CGG-CGT-CGT-CGT-CGC-CGT	Design primers
1806962	GCCCCGACGCGCCGCGCCGCGCACTGACGC	Design primers
1813178	TCGCGATCGCGCGCGCGATCGTGA	Design primers
1821285	CGATCGCGAGCGCGACCGAGATCG	Design primers
1836306	CG-CG-GG-CG-CG-GC-CG-CG-AG-CG-CG-TG	Design primers
1848076	GACGTCGACGTAGTCGTCGACGTG	Design primers
1865338	CGCCGCGCAGCGCGGCGGCGAGCCG	Design primers
1874434	GCGGACGCCGCAGACGCCTCGGACGCC	Design primers
1892180	CGAAATCGTCGTCGTCGATGCCGTCGTCGTCGAATTCCTCGTCGT	Design primers
1930856	CGACCTCGACCGCCACCTCGACCG	Design primers
1959840	GCCGCACTGATGCTGCACCGATGCCGCACCGAT	Design primers
1962027	GCTCGATGCCGCGCTCGGTGCGGCGCGCGATGCCGA	Design primers
1983170	GTCCCAGCCCGAA-GTCCCAGCCCGAA-GTCCCAGCCCGAA-GTCCGAGCCCGAA-GTCCGAGCCCGAG	Design primers
1991325	GCCGCCGATCAAGCCGCCCGTCAAGCCGCCCATCGAGCCGCCCGTCAA	Design primers
1992924	CTGCGGCAGCGGCTGCCGCTGCGC	Design primers
2030576	GCCGCGTCATGCGGCGCCATGCGGCGTGAT	Design primers
2056983	GCGACG-GCGACG-ACGACG-GCGACT-GCGACG	Design primers
2063484	AGCGGCGCACCGCGAAGCGCAGCCCCGCGAAGCGGCGCGCATCGA	Design primers
2077117	GCG-ACG-GCA-ACG-GCG-GCG-GCG-TCG	Design primers
2085014	ACGCGACGATGCGACGATGCGACG	Design primers
2095698	GCCGC-GCCGA-GCGGC-GCGGC-GCAGC	Design primers
2118161	CGATCACGATCGCGATGACGAGCA	Design primers
2150342	GCT-GCT-GCA-GCT-GCT-GCA-GCT-GCT	Design primers
2161592	CGCAGCGCCGG-TTCAGCGCCAC-TTCAGCGCCAC-TTCAGCGCCAC-TTCAGCGCCGG-TTCAGCGCCAA	Design primers
2178608	CGCTCACGTCGCTCATGTCGCTCACGC	Design primers
2223618	TCGTCGTCTTCGTCCTCGTCGACG	Design primers
2266950	CGCGCGCGAGCGCGCGCTCGCCCG	Design primers
2272887	CGACAG-CGACAG-CGGCAG-CGTCAG	Design primers
2294688	GTCGCCCTGC-GCCGCCCTGC-GCGGCCCTGC	Design primers
2329469	GCGGTGA-GTGGCGA-GTGGTGA-TCGGTGA-GCGGTGA-GCGGTGA-GCGGTGA-GCGGTGA-GCGGTGA	Design primers
2330249	CGCGTGCGCATGCGCGAGCGCGTC	Design primers
2418943	GCCGCT-GCCGCT-CCCGCT-GCCGGT	Design primers
2434198	CGTCGGGCGCGGCGGGCGCGTCCGGCG	Design primers
2440696	CGATCG-CGAACG-CGAACG-CGACCG	Design primers
2442003	AAACGGTGGGAAACGGTGGAAAGCGGCGGG	Design primers
2453785	CAC-CGC-CGC-CGC-CTC-CGC-CGC-CGC	Design primers
2471103	CCCGCCGCGCTCGCCGCCGCGTTCACCGCCGCGCTC	Design primers
2472414	GCCGC-GGCGC-GCCGC-GCGGC-GCCGC	Design primers
2478159	CGTCGGCTTCGGCGCCGGTGTCGG	Design primers
2479079	GCCGCCCCCGCCGCCGACACCGCC	Design primers
2488174	GCACCGCAGCGCCGCAGCACCGGA	Design primers
2489857	CGCGCGACTGAAACGCGACTGAAGCGCGACCGA	Design primers
2499592	AAAGGCGAAAAGCCGAAATGGCGA	Design primers
2520854	CCGCGTCGCGCGCCGTCGCGCGCCGTCGCG	Design primers
2523821	ACTTCTGAGCTTCTGATCTTCTGA	Design primers
2562893	GCCGCAATCGGCCGCGATCAACCGCGATCG	Design primers
2575864	ATGCGCGGCGCGTCG-ATGCGCCGGGCGTCG-ATACGCCGGGCGTCG-ATACGCCGGGCGTCG	Design primers
2576832	CGGCGCACGTTGCA-CGCCGCCCGTTGCA-CGCCGCCCGTTGCA-CGCCGCCCGTTGCA	Design primers
2599528	CGCTT-CGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG-TGCCG	Design primers
2599589	GCCGG-GCCGG-GCCGG-GCCGG-GCCGG-GCCGG-GCCGG-GCCGA	Design primers
2599630	CGGAGCTGAG-CCGAGCTGAG-CCGAGCTGAG-CCGAGCTGAG-CCGAGCTGAG-CCGAGCCGAG-CCGAG	Design primers
2608682	GCGCGAGCCCGAGCACGAGCGCGA	Design primers
2617206	GCCGGGCGGCCCGGCGACCGGGCG	Design primers
2630983	GCGCGAGCTCGAGCGCGCGCACGA	Design primers
2645227	CGCGAGCGCGCGCGCGATCTCGAG	Design primers
2676304	GCGACGTGACGCGACGCGGCGCGCC	Design primers
2683126	AGCTGCTTCGGCTGCTGCTCCGGCAGCTGCTTCGGC	Design primers
2718356	CGA-CGA-CGG-CGA-CGA-CGA-CGC-CGA	Design primers
2727359	TGCCGAAT-CGCCGAAT-CGCCGAAT-CGCCGAAT	Design primers
2759435	AGCACGACCACGAACACGAGGACG	Design primers
2765968	GGCGTGCGGTCGTGCGGTCGTGCG	Design primers
2766266	GACGCCGACGCAGGCGCCGAGGCC	Design primers
2773385	TGGTCTCGGTTT-CGGTCTCCGTTT-CGGTCTCGGTTT-CGGTCTCGGTTT-CGGTCTCGGTCT-CGGTCTCGGTCT-CGGTCTCGGTTT	Design primers
2773477	GTTTAG-GTTTAG-GTTTCG-GTTTCG	Design primers
2857872	TGGCCGGCCGCACCTCGCCGGCCACACCTCGCCGGCCGCACC	Design primers
2875733	GGTGCGGCCGGCGAGGTGCGGCCGGCCAGGTGCGGCCGACCA	Design primers
2877049	CGCGTCACGGCGTCACCGCATCAC	Design primers
2918254	GGCGTACCGACGCCC-GGCGTACCGACGCCC-GACGTATCGACGCGC	Design primers
2937462	CGTGCCGGCCGCCGG-AACGCCGGCCGCCGG-AACGCCGGCCGCCGG-AACGCCGGCCGCCGG	Design primers
2945348	TCGTCGTCGTCCGCGTCGTCGGCG	Design primers
2984126	AG-CG-CG-AT-CG-CG-CG-CG-CG-AG-CG-CG	Design primers
3013860	CGCACGCGCCGGACGCGCCGCACGCGA	Design primers
3033046	CGCGCGCGCTGCCCGTGCGCGCGGCCGGCGCGAGCTGCC	Design primers
3052238	GGAATCCGGGATTCCGGAAATCCG	Design primers
3075365	CGGCGCGACGAGCGCCGCGCCGAGCAGCGCGCCGAG	Design primers
3079597	GGCACCGATTCGAGCGCCGATTCGAGCGCCGATTCG	Design primers
3087136	CCGACCACCGAGCCGCCGACCGTGGAGCCGCCGACCGTCGAGCCGCCGACTACCGAGCCG	Design primers
3088528	GGCGCGGCCGCGGGCGCGGGCTCG	Design primers
3092539	ACCGCGCCCAAGCCGGCCGCGCCTGAGCCGGCCGCGCCCAAGCCG	Design primers
3093409	CCCGCCGACGCGGCACCGGCCGCCGCGGCATCGGCCGCCGCGGCA	Design primers
3094400	CCGCGCGG-CCGCGCGG-GCGCGCGG	Design primers
3101444	TCGCCGACCTCGTCGACCTCGTCGACC	Design primers
3103468	ACCGCTGCCCGCCCGCTGCTCGCCCGCTGTCCG	Design primers
3103726	CGCCGCGGCCGCCGTCGCCGCCGC	Design primers
3170222	CTG-CTC-CTG-CAC-CTG-CTG-CTG-CTG	Design primers
3173325	CG-AG-CG-CG-AT-CG-CG-CG-CG-CG-AG-CG	Design primers
3180422	ATCCCGCCGTCCCGCCTTCCCGCC	Design primers
3181674	TCGCTGTCGCAGTCGATGTCGCTC	Design primers
3293772	CGCGCTGCGCCGCACCGCGGCGCTC	Design primers
3330026	CGC-CGT-CGC-CAT-CGC-CGC-CGC-CGC	Design primers
3339210	GCCGTCGCCGTTGCTGTCGCCCTC	Design primers
3347720	ATTCCA-GCTCCA-GCTCCA-GCTCCA-GCTCCA-GCTCCA-GCTCCA-GCTCCA	Design primers
3347816	GCCTCG-GGCTCG-GGCTCG-GGCTCG	Design primers
3347846	GGGCTCG-TGGCTCG-TGGCTCG-TGGCTCG	Design primers
3347902	GGCTCG-GGCTCG-GGCTCG-GGCTCG-GGCTAG	Design primers
3347933	GGCTCGGGCTAGG-GGCTCGGGCTAGG-GGCTCGGGCTAGG-GGCTCGGGCTAGG	Design primers
3347986	GCTCGGACCTATGG-GCTCGGACCTATGG-GCTCGGACCTATGG-GCTCGGACCTCGGG	Design primers
3388069	TGGCCGCCGTGCCCGCCGTGCCCGCCG	Design primers
3390404	GCTGTC-CTCGTG-GTCGTG-GTCGTG-GTCGTG-GTCGTG-GTCGTG-GTCGTG-GTCGTG-GTCGTG-GTCGTG-GTCGTG	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

26318

GGTCGCGGTGGCTGTCGCGGTCGA