Microsatellites /Tandem Repeats database

Genome: Hydrogenobaculum sp. Y04AAS1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
8700AATTTACAAGTCTGCCACGCTTCACAAGTCTGCCACGATTTACAAGTCTGCCACDesign primers
19605TTTTTTGTTTATTTTTTTTCTTTTTDesign primers
67709TT-TA-CA-TC-TT-TT-AC-TT-CT-TT-TA-TA-TC-TDesign primers
94752TATTGCAACATTGATGCAACATTGATGCAACATDesign primers
108498AATAGTGGCAGACTTGTTGGTCGTGGCAGACTTGTTTGTCGTGGCAGACTTGTTDesign primers
125178TTTA-TTTA-ATTA-TTTA-TTTA-ATTADesign primers
174352AAAAGAAAAAGAAGAAGAAAAAGTDesign primers
203274ACGACAAGTCTGCCACGG-TTCACAAGTCTGCCACGG-TTCACAAGTCTGCCACGGDesign primers
388595CACGCCCCACAAGTATGC-CACGATCTACAAGTATGC-CACGATCTACAAGTATGC-CACGATCTACAAGTATGC-CACGATCTACAAGTATGC-CACGATCTACAAGTATGC-CACGATCTACAAGTATGCDesign primers
490488TAGCTTTTA-TAGCTTTTA-TAGCTTCTADesign primers
492364AAGCTTTAGAAAATCTTTATAAAAGCTTTAAATDesign primers
545783TTTTA-TTTTA-TGTTA-TTATA-TTTTCDesign primers
591771GGATTAAAAAGGATTTTAAAGGCATAAAAADesign primers
661640ATAAAAATAAGAATAAATATAATADesign primers
701982TTTTTATCTTTTGTTATATTTTTTGATATTDesign primers
838421TA-TA-TA-AA-AA-TA-TA-AA-CA-TA-TA-AADesign primers
849833AAAACTATAAAAACTATGAAAACAATADesign primers
892548CTG-GTG-GAG-GGG-GTG-GTG-GTG-GTG-GAG-GTG-GTG-GTG-GAG-GTG-GTGDesign primers
928229AAGATGATATAAAAGAAGAGATAAAAGATTTTATAADesign primers
1017528AAAAGCAAAGTAAAGATAAGATAAGDesign primers
1040523AACAAGAAGGAT-TACAAGAAGGAT-TACAAAAAGGATDesign primers
1045801CAAGTATGCCACGATAAA-CAAGTATGCCACGATAAA-CAAGTATGCCACGGTTTADesign primers
1049683TTTTTTGTGCCACTTCTTGTGCCATTTTTTGTGCACDesign primers
1051388AAAGGGCCGTTCT-CTAGGGCCGTTCT-CTAGGGCCGTTCTDesign primers
1075070AATCGTGGTAGACTTGTAAATCGTGGCAAACTTGTGGATCGTGGCATACTTGTAAACCGTGGTAGAGTTGTADesign primers
1105021TT-TA-TT-TT-TT-TA-TC-TT-TA-TA-TT-TTDesign primers
1183902ACATGTTTGACGTGTTTGATATGTTTGDesign primers
1226469CT-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CDesign primers
1304117GCTTTTGCTTCTTCTTTTTCTTTTDesign primers
1332091AAGAAGAAGACGAAGATGAAAAAGDesign primers
1341716CGACAAGTCTACCACGATCCACAAGTCTACCACGATCCACAAGTATGCCACGATDesign primers
1358951ATAAAAAAATACAAAAATCAAAAADesign primers
1427907GCAAATGTAAATGCTAATGTAAATDesign primers
1433514TGTTTA-TGTTTA-TATTTA-TGTTTGDesign primers

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