Microsatellites /Tandem Repeats database

Genome: Alteromonas macleodii Deep ecotype

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
854053TGCTCTTCGAGTC-TGCTCTTCGAGTC-TGCTCTTCGAGTCDesign primers
966633CTTGCCC-CTTGCCC-CTTGCCC-CTTGCCC-CTTGCCC-CTTGCCCDesign primers
1113283GCTAAC-GCTAAC-GCTAAC-GCTAACDesign primers
1278382GCTACTT-GCTACTT-GCTACTT-GCTACTT-GCTACTT-GCTACTT-GCTACTTDesign primers
2217283CTAATAGGAAATACTACTGAA-CTAATAGGAAATACTACTGAA-CTAATAGGAAATACTACTGAADesign primers
2889994CTGACTTG-CTGACTTG-CTGACTTG-CTGACTTG-CTGACTTGDesign primers
3055945ATAGTGCGG-ATAGTGCGG-ATAGTGCGG-ATAGTGCGG-ATAGTGCGG-ATAGTGCGG-ATAGTGCGGDesign primers
3198214TAACGCCTT-TAACGCCTT-TAACGCCTTDesign primers
4072906ATGAAC-ATGAAC-ATGAAC-ATGAAC-ATGAAC-ATGAAC-ATGAAC-ATGAACDesign primers
4231342CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCG-CTATTCGDesign primers

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