Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Bacillus cereus AH187

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
9192	ATAATATACTATGATATATTATAAA	Design primers
207198	CATAATTAAT-TATAACTAAT-TATAACTAAT-TATAACTAAT	Design primers
372795	AGAAAG-AGGAAG-AGGAAG-AGGAAG	Design primers
483865	ACGATTGCCGCCCGAGCCATTGCCACCCGAGCCATTGCCGCCCGA	Design primers
483911	CCGTTGTCGCCCGAGCCGTTGTCGCCAGAGCCACTGCCGCCCGAG	Design primers
484007	CCACCAGAACCACTGCCATCAGAACCGCTACCGCCGGAACCATTGCCACCAGAACCACTGCCATCAGAACCGCTA	Design primers
484178	CTAGAGCCATTGCCACCCGAGCCGTTGCCATCAGAACCATTGCCACCAGAACCACTGCCA	Design primers
484247	CTAGAGCCATTGCCACCCGAGCCGTTGCCATCAGAACCATTGCCACCAGAACCACTGCCA	Design primers
484316	CTAGAGCCATTGCCACCCGAGCCGTTGCCACCAGAACCACTGCCA	Design primers
484377	TAGAGCCATTGCCACCAGAACCATTGCCATCAGAGCCGTTGCCGCCAGAACCGTTGCCAC	Design primers
484452	CAGAACCATTGCCAC-CCGAGCCGTTGCCAC-CAGAACCACTGCCAT-CAGAACCATTGCCAC-CAGAACCATTGCCAC-CAGAACCATTGCCAC-CAGAACCATTGCCAT-CAGAGCCGTTGCCGC-CAGAACCGTTGCCAC	Design primers
575372	ATAAGAATCTATAAAAAACTATAAAAATTT	Design primers
581256	GAAAAAGCAAAAGAAAAAGGAAAA	Design primers
591334	CAAAAAGAAAAAGAAAAAGAAAAAGAAAAACAACAACAAGAA	Design primers
691308	CTT-TTT-CTT-CTT-GTT-TTT-CTT-CTT	Design primers
696202	TCTTTTTTTGTATCTTCTTTTGTATCTTCTTTCGTA	Design primers
708874	TATCCAGCGCCATATCCAGTGCTATATCCAACACCA	Design primers
791897	TCTGCTTCTGCATATGCTTTTGCT	Design primers
853176	AGCGCCTCCAATTGCGCCGCCAATAGCGGCTGCAAT	Design primers
893862	GAGCTTTAGCTGCTTCTTGAGCCTTAGCTTCTGCTTGAGCTTCAGCTACTGCTT	Design primers
893917	AGCTGCTTCACGAGCTTCAGCTGCTTCTTGAGCTTTAGCTGCTTCACGAGCTTT	Design primers
893979	CTTGAGCTTTAGCCGCTGCTTGAGCTTCAGCTACTGCTTGAGCTTTAGCTGCTT	Design primers
894036	GAGCTTTAGCTGCTTCTTGAGCCTTAGCTTCTGCTTGAGCTTCAGCTGCTTCTTGAGCTTTAGCTTCTGCCTGAGCTTTAGCTGTCTCTTGAGCCTTAGCTGCTTCACGAGCTTTAGCCGCTGCTTGAGCTTCAGCTGCTTCGCGGGCTTTAGTTGCTTCCT	Design primers
916612	AAAGAAGTGGACAGAAGGGGAAAGAACTGT	Design primers
922747	AA-AA-GA-AA-TG-AA-GA-GA-AA-AT-AA-AA-A	Design primers
1000174	AGAAAAAGAAGCTGAAAAAGAAACAGATAAAGTAGC	Design primers
1033571	TTATTTATTTATATATATTTATATTTAATT	Design primers
1073772	TTTTTATTTATTTTCATTTCATTTTTTTTA	Design primers
1148420	GAATCGTCGATATATTGAAAAAATCGTTGATATATTCGAAAAATCGCCGATATATTCAGA	Design primers
1233049	TAATTTATAATAATTTTAAATAAATAATAA	Design primers
1239981	GATAAAAATATAAAAAGTTAAAAA	Design primers
1250191	AAGAATAAAAAGCATAAAAAGAATAAAAAGAATAAA	Design primers
1286360	TGGTCCAGTCGGTCCAGTCGGTCCAGTCGGTCCAGTTGGCCCAGTTGGTCCGGT	Design primers
1286526	CCAGTTGGC-CCAGTCGGT-CCAGTTGGT-CCAGTTGAT-CCAGTCGGC-CCAGTTGGT	Design primers
1286604	GGTACAGTT-GGCCCAGTC-GGCCCAGTT-GGTCCAGTC-GGTCCAGTC-GGTCCAGTC	Design primers
1286671	CAGTTGGCCCAGTCGGCCCAGTTGGTCCAGTCGGCCCAGTTGGTC	Design primers
1294699	AGAACAACAAGAACAACAAGAAGAAGAGCAACAAGAAGAACAAGTAGA	Design primers
1320634	TTTCGGTTCTTTTGGTTCTTGCGGTTC	Design primers
1348960	TTTTGAACGTTTATGTACGTTTTTGAAAGA	Design primers
1359098	TTCAGCAGGCTTTTGCTCAGCTGGTTTTTGTTCAGCCGGTTTTTG	Design primers
1359191	TTCAGCAGGCTTTTGCTCGGCAGGTTTTTGCTCAGCCGGCTTTTG	Design primers
1499683	AGAAGAAGAAAAACGAAGAAAAGAAGAAGAGAAGAGAAGGAAAGAAGAAGAACAACAACGAAA	Design primers
1501237	AGCACCAGT-AGCACCAGT-AGCGCCAGT	Design primers
1534409	AAATATTT-AAATATTT-AAGTATTT	Design primers
1617747	GTTCCCAGTAGATCCAGTGTTCCCAGTAGGTCCAGAGTTTCCGGTAGGTCCAGT	Design primers
1617875	TACCAGTAGGTCCGGTGTTGCCGGAAGGTCCGGTGTTCCCAGTAGGTCCAGAGT	Design primers
1618128	TCCAGTAGCTCCAGAGTCGCCGGTAGCTCCAGTGTCGCCGGTAGCTCCAGTGTC	Design primers
1618199	TGCCAGTAGGTCCAGTAGTCCCAGTAACTCCAGTAGAGCCAGTAGGTCCAGTAGTCCCAGTAACTCCAGTAG	Design primers
1618326	TCCAGTGATACCGGTAGGTCCGGTGTTTCCGGTAGGTCCGGTGATCCCAGTAGG	Design primers
1618393	GTAGCTCCAGTGATCCCAGTAGGTCCGGTGATCCCAGTAGGTCCAGTAGTCCCA	Design primers
1618591	GTGTTGCCAGTAGGTCCAGTGTCGCCGGTAGCTCCAGTGATCCCAGTAGGTCCGGTGTTGCCAGTAGGTCCGGTGATCCCAGTAGGTCCAGTGTCGCCGGTAGCTCCAGTGATCCCAGTAGGTCCGGTGATCCCAGTAGGTCCA	Design primers
1618912	CCGGTAGCTCCGGTAGGTCCGGTAGCG	Design primers
1619032	GTGTTGCCAGTAGGTCCAGTGTCGCCGGTAGCTCCAGTATCGCCAGTAGGTCCGGTGTTGCCAGTAGGTCCAGTGTCGCCGGTAGCTCCAGTGATACCAGTAGGTCCGGTGTTGCCAGTAGGTCCAGTGTTGCCGGTAGCTCCG	Design primers
1619177	TAGGTCCGGTGTTGCCAGTAGGTCCGGTGTTACCAATAGCTCCAGTGTTGCCAGTAGGTCCGGTGTTGCCAGTAGGTCCAGTGTCGCCGG	Design primers
1681695	TTTTTTTGTATTCTTTTTTATATTTTTGTA	Design primers
1691477	AAAAGGTCTTAAAAGATTTTAAAAGCCCTT	Design primers
1761147	TATTAAATTATATTTAAATAAATTAAATTA	Design primers
1774761	TTGTAGGTTTTTGTATGATTTTGTAGGTTC	Design primers
2065497	GACAAA-AAGAAA-AAGAAA-AAGAAA-AAGAAA-AAGAAA-AAGAAA-AAGAAA	Design primers
2102436	AACACCCATAA-AACACCCATAA-AACAGCCACAA	Design primers
2102545	TGAAACGAAATGAAACTATATAAAACGAAG	Design primers
2157659	GTATAATCGCTGATATATTTTAAGAATCGCTGATATATTTGAATTATCGCCGATATAATT	Design primers
2278966	AAGAAGCAAGAAGAACAAAAGAAACTAGAAGAGCAAAAGAAACAAGAAGAAGAAAAGAAACAAAATGAACAA	Design primers
2376252	CAACGGGAG-CAACAGGAG-TAACGGGAG-CAACAGGAG-CAACAGGAG-TAACGGGAG-CAACAGGAG-CAACAGGAG-CAACAGGAG	Design primers
2376360	CAGCAGGAGCAACAGGAGCAACAGGAG	Design primers
2376397	AACAGGAGT-AACGGGAGC-AACAGGAGC-AACAGGAGT-AACGGGAGC-AACAGGAGC	Design primers
2376452	ACAGGAGCAACAGGGTCAACGGGAGCAACAGGATCAGCAGGAGCAACAGGAGCA	Design primers
2376507	CAGGAGTAACGGGAGCAA-CAGGAGTAACGGGAGCAA-CAGGAGCAACAGGAGTAA-CGGGAGCAACAGGAGCAA-CAGGAGTAACAGGGACAA-CAGGAGCAACGGGAGCAA	Design primers
2376616	GGGAGCAACAGGGGCAACAGGAGCAACGGGAGCAACAGGGGCAACAGGAGCAACGGGAGCAACAGGGGCAACAGGAGCAACAGGTCCAAC	Design primers
2378270	CGGCCCAACAGGAGCAACAGGGGCAACAGGAGCAACAGGCCCAACAGGAGCGAC	Design primers
2378345	CGGAGCAAC-AGGAGCAAC-AGGAGCAAC-AGGAGCAAC	Design primers
2378463	GGAGCAACAGGTTTAACAGGAGCAACAGGCTTAACAGGAGCAACAGGCCCAACAGGAGCAACAGGCCCAACAGGAGCGACAGGTCCAACAGGAGCAACAGGCCCAACA	Design primers
2400372	GGTTCAAGAAGTGATTCAAGACGTGGTTCGAGAAATGGCTCAAGAAGT	Design primers
2442100	AAAGATAAAAATATAAAACGATAA	Design primers
2500792	GAA-TCA-TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAA	Design primers
2665239	AAAT-AAAT-AATT-AAAT-AATT-AAAT	Design primers
2686285	ATAAATATAAACATGAATATAAAT	Design primers
2703917	TGATTCGCAATCTTCTTTTTT-TGGTTCACAATCCTCTTTTTT-TGGCTCACAATCCTCTTTTTT-TGGCTCACAATCCTCTTTTTT-TGGCTCACAATCCTCTTTTTT-TGGTTCACAATCCTCTTTTTT-TGGTTCACAATCCTCTTTTTT	Design primers
2754891	AGCAAAAGAGAT-TGCAAAAGAGAT-TGCAAAAGCGAT	Design primers
2780511	TGCTTTTGCTTCTTCTTTAGCTTT	Design primers
2844752	GGAAATGAAAATGGAAAATGAAAT	Design primers
2850482	TATATATACTTTATATACAATATATAC	Design primers
2865199	TCACTTGCACTTTCTCTTTCAATT	Design primers
2955817	TCCATGTCCGCCTTGCCAACC-ACCATGTCCGCCTTGCCAACC-ACCGTGTCCGCCCGGCCAACC-ACCATGTCCGCCTTGCCAACC-ACCATGTCCACCTTGCCAACC-ACCGTGTCCGCCTTGCCAACC-ACCGTGTCCGCCCGGCCAACC-ACCGTGTCCACCTTGCCAACC-ACCGTGTCCACCTTGCCAACC-ACCGTGCCCGCCTTGCCAACC-ACCATGCCCGCCTTGCCAACC-ACCGTGTCCACCTTGCCAACC	Design primers
2998059	TATTTT-TAATTT-TAATTT-TAATTT	Design primers
3038037	CCTTATTTTTCCTTAAATTTCATTGTTTTT	Design primers
3080236	GCTTATAAGGGGCTTGGAAGGGGCTTGGAAGGG	Design primers
3109393	GGTTGTTGCTCTTGTTGTTTCTCTTGTTGTTTCTCT	Design primers
3147814	GTCGCTCCGGTTGCTCCGGTTGCTCCG	Design primers
3148312	ATACCTTGTATACCTTGAATTCCTTGT	Design primers
3249844	ATGAAATTATATCGACGATTTTTAAAATATATCAACGATTTTCTAAGTATATCGACGATT	Design primers
3268919	TC-TT-TT-AT-TT-TC-TT-GT-TT-TT-TC-TA-T	Design primers
3516866	CAACCATAAACATTCATAAATAACCAAAAACAATCACAAA	Design primers
3582083	GTTCTTCTTTCTTTGGCTCTTCTTTTTTCGATTCTTCTTTTTTTGGTTCCTCTTTTTTCG	Design primers
3642174	CAATTCCAACTCCAATTGCAATTG	Design primers
3697104	AATCTTCAAACCTTCAAATCTTCC	Design primers
3734025	TGTGGTCAA-TGTGGTCAA-CGTGGTCAA	Design primers
3761076	TTTTTCTTTTCTTTTTTTCTGTTTTTTCTT	Design primers
3785075	TCCTTTTCTTTTCCATTTTCTTTTTTCTTTTCTTTT	Design primers
3820418	CAAGTGCAAGTCCAACTGCAAGTC	Design primers
3842405	TCACAACCACAATCTCAATTACAA	Design primers
3888912	TTTTTGAACATTTATTGAACTTTTTTTGAATTTTTTCTGAAAAT	Design primers
3971559	TGCTCTGCAACTTGCATTGCAACTTGCTCTCCAATT	Design primers
4016749	TTGTTTCTTTATTTG-ATGTTTCTTTATTTG-ATGTTTCCTTGTTTG	Design primers
4096668	CAGCAACAATACCAACACCAATACCCGCAACAATAT	Design primers
4150308	TCAAATCAACGCAAATGAAATAAAA	Design primers
4224659	TTTTGCGGTTTCACCTGTACTTCCTTTTGTGGCTTCACTTGTATTTCCTTCTGTGGTTTTACCTGTACTTCTTTTTGTGGTTTCACTTGCATTTCC	Design primers
4256647	AAATA-ATAAA-ATAAG-AAAAT-AAAA	Design primers
4259349	TCTTCTATTTCCTCTTCTTCTACTTCCTGCTCTTTTCTTTCTTCT	Design primers
4297554	TTATCTTTATCCTTATTTTTATCATTATTT	Design primers
4315189	CCCGTTGCTCCCGTTACTCCCGTTGCT	Design primers
4315243	CCTGTTGAACCTGTTGCTCCGGTCGGACCTGTTGCTCCCGTTGGACCTGTTGCTCCCGTTGGACCCGTTGCT	Design primers
4315522	CCTGTTGCT-CCTGTTGCT-CCCGTTGCT	Design primers
4315558	CCTGTCGCTCCCGTTGAACCTGTCACTCCGGTTGGACCTGTTGCTCCCGTTGAA	Design primers
4315648	CCTGTTGCTCCCGTTATTCCTGTTGCTCCTGTTGCTCCCGTTGCTCCCGTTATTCCTGTTGCTCCTGTTGCTCCCGTTGCTCCCGTTATT	Design primers
4315739	CTGTCGCTCCCGTTGAACCTGTCACTCCGGTTGGACCTGTTGCTCCCGTTGGAC	Design primers
4315801	CCAGTTGGACCTGTCGCTCCCGTTGGACCCGTTGCTCCCATTGGACCTGTCGCTCCCGTTGGACCCGTTGCT	Design primers
4331209	CCTTGGTCGTTATTTCCACCTTGGTTGTCGTTTCCACCTTGATGGTCATTTCCACCTTGGTTGTCGTTTCCA	Design primers
4331282	CTTGGTTGTCATTTTCACCTTGGTTGTTGTTTCCACCTTGGTTGTTGTTTCCACCTTGGTTGTTGTTTCCACCTTGGTTGTCATTTTCGC	Design primers
4331752	TCTCCGCCTGATTGTTTA-TCTCCGTCTGGTTGTTTG-CCTCCGTCTGGTTGTTTA-CCTCCGTCTGGTTGTTTA-CCTCCGTCTGGTTGTTTA	Design primers
4331843	CTCCGTCTGGTTGTTTGTCTCCGTCTGGTTGTTTATCTCCGTCTGGTTGTTTGCCTCCGTCTGGTTGTTTGTCTCCGTCTGGTTGTTTGT	Design primers
4345622	ACTTACCGACATTTTCCGACATTTTCCGAC	Design primers
4397360	TAAAACAAAATAAAGTTAAAGAAAA	Design primers
4415592	TATTCTCTTATGCTCTTGTTCTCT	Design primers
4457347	AAGAAGAAGAAGAAAAAGAGGAAG	Design primers
4471037	GGTGTTTCTTCTGCAACTGGTTGTTCTTCTACAACTGGTTGTTCTTCTACAACT	Design primers
4502724	TGGACCTTGAATCCCTTGCGGGCCTTGAATTCCTTGGGGACCTTGAATTCCTTG	Design primers
4503032	CTCCGGTTGCTCCCGTTGCTCCGGTCG	Design primers
4513565	GCTCCTGCTGCTGCCCCTGCTCCT	Design primers
4513646	TATTGTTGGTGTTGTTGGTGTTGTTGG	Design primers
4513963	GTGATGACCATGATGACCGTGCTGACC	Design primers
4513999	GTGATGACCATGATGACCGTGCTGACC	Design primers
4546407	ACTGGACCCACTGGCATCACCGGACCTACCGGCATCACTGGACCTTCTGGCATCACCGGATCCACTGGCATCACTGGACCCACTGGCATCACTGGACCCACTGGCATC	Design primers
4546891	CTACTGGAAGCACCGGATCTACCGGAAGCACCGGACCCACTGGCATCACCGGATCTACTGGCATCACCGGATCTACTGGAAGCACTGGAC	Design primers
4546982	CACTGGCATCACTGGACCCACTGGCATCACTGGATCTACTGGCATCACTGGACC	Design primers
4547061	AGCACTGGACCCACTGGCATCACTGGATCTACTGGCATCACTGGATCCACCGGC	Design primers
4547274	GGAAGCACTGGACCCACTGGCATCACTGGGCCCACTGGCATCACTGGACCCACC	Design primers
4568761	TCTGGTTTCACTTCCGGTTTTACTTCTGGTTTCGGT	Design primers
4591422	AAAGAGGCATGGAAAAAGGTATGGAAAAAGGTATGG	Design primers
4768956	TAAATTTTTATAGTTTTTTATAGATTCTTA	Design primers
4849879	GACAGGCCCAACTGGGGC-AACAGGCTCAACTGGGGC-AACAGGCTCAACTGGAGC-AACAGGTACAACTGGGGC-AACAGGCTCAACTGGGGC-AACAGGCTCAACTGGAGC-AACAGGCTCAACTGGGGC-AACAGGCTCAACTGGAGC-AACAGGCTCAACTGGGGC-AACAGGCTCAACTGGAGC-AACAGGCTCAACTGGAGC-AACAGGTCCAACTGGGGC-AACAGGCTCAACTGGAGC-AACAGGTCCAACTGGGGC-AACAGGTCCAACTGGGGC-AACAGGCTCAACTGGGGC	Design primers
4941091	TTGTGC-TGGAGC-TTGTGC-TTGTGC-TTGTGC-TTGTGC	Design primers
4960213	AAACAAGGC-AAACAGGAC-AAACAGGAT-AAACAGGAC-AAACAGGAT-AAACAGGAC	Design primers
4993725	AAAACAATAACAACAATAACAACAATA	Design primers
5044269	AAATAATTTCA-AAATAATTTCA-AAATAATTCAA	Design primers
5046155	TTCTTCGTTTTTCTTTATTTTTCTTCTATT	Design primers
5046201	AT-AA-AA-AA-AT-AA-AA-AT-AC-AA-AA-AA	Design primers
5047452	TTCTTTTCTATACTTTTGTTTTGTT	Design primers
5064918	GCCTTCGCTTTCGCCTTGGCCTTT	Design primers
5065019	TGCCTTCGCCTTTGCTTTGGCCTT	Design primers
5065223	CGCCTTCGTCTTCGCTTTGGCCTT	Design primers
5146115	TTCTTTTTTTCGTTTTTTCCTTTT	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

9192

ATAATATACTATGATATATTATAAA