Microsatellites /Tandem Repeats database

Genome: Bacillus cereus AH187

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
9192ATAATATACTATGATATATTATAAADesign primers
207198CATAATTAAT-TATAACTAAT-TATAACTAAT-TATAACTAATDesign primers
372795AGAAAG-AGGAAG-AGGAAG-AGGAAGDesign primers
483865ACGATTGCCGCCCGAGCCATTGCCACCCGAGCCATTGCCGCCCGADesign primers
483911CCGTTGTCGCCCGAGCCGTTGTCGCCAGAGCCACTGCCGCCCGAGDesign primers
484007CCACCAGAACCACTGCCATCAGAACCGCTACCGCCGGAACCATTGCCACCAGAACCACTGCCATCAGAACCGCTADesign primers
484178CTAGAGCCATTGCCACCCGAGCCGTTGCCATCAGAACCATTGCCACCAGAACCACTGCCADesign primers
484247CTAGAGCCATTGCCACCCGAGCCGTTGCCATCAGAACCATTGCCACCAGAACCACTGCCADesign primers
484316CTAGAGCCATTGCCACCCGAGCCGTTGCCACCAGAACCACTGCCADesign primers
484377TAGAGCCATTGCCACCAGAACCATTGCCATCAGAGCCGTTGCCGCCAGAACCGTTGCCACDesign primers
484452CAGAACCATTGCCAC-CCGAGCCGTTGCCAC-CAGAACCACTGCCAT-CAGAACCATTGCCAC-CAGAACCATTGCCAC-CAGAACCATTGCCAC-CAGAACCATTGCCAT-CAGAGCCGTTGCCGC-CAGAACCGTTGCCACDesign primers
575372ATAAGAATCTATAAAAAACTATAAAAATTTDesign primers
581256GAAAAAGCAAAAGAAAAAGGAAAADesign primers
591334CAAAAAGAAAAAGAAAAAGAAAAAGAAAAACAACAACAAGAADesign primers
691308CTT-TTT-CTT-CTT-GTT-TTT-CTT-CTTDesign primers
696202TCTTTTTTTGTATCTTCTTTTGTATCTTCTTTCGTADesign primers
708874TATCCAGCGCCATATCCAGTGCTATATCCAACACCADesign primers
791897TCTGCTTCTGCATATGCTTTTGCTDesign primers
853176AGCGCCTCCAATTGCGCCGCCAATAGCGGCTGCAATDesign primers
893862GAGCTTTAGCTGCTTCTTGAGCCTTAGCTTCTGCTTGAGCTTCAGCTACTGCTTDesign primers
893917AGCTGCTTCACGAGCTTCAGCTGCTTCTTGAGCTTTAGCTGCTTCACGAGCTTTDesign primers
893979CTTGAGCTTTAGCCGCTGCTTGAGCTTCAGCTACTGCTTGAGCTTTAGCTGCTTDesign primers
894036GAGCTTTAGCTGCTTCTTGAGCCTTAGCTTCTGCTTGAGCTTCAGCTGCTTCTTGAGCTTTAGCTTCTGCCTGAGCTTTAGCTGTCTCTTGAGCCTTAGCTGCTTCACGAGCTTTAGCCGCTGCTTGAGCTTCAGCTGCTTCGCGGGCTTTAGTTGCTTCCTDesign primers
916612AAAGAAGTGGACAGAAGGGGAAAGAACTGTDesign primers
922747AA-AA-GA-AA-TG-AA-GA-GA-AA-AT-AA-AA-ADesign primers
1000174AGAAAAAGAAGCTGAAAAAGAAACAGATAAAGTAGCDesign primers
1033571TTATTTATTTATATATATTTATATTTAATTDesign primers
1073772TTTTTATTTATTTTCATTTCATTTTTTTTADesign primers
1148420GAATCGTCGATATATTGAAAAAATCGTTGATATATTCGAAAAATCGCCGATATATTCAGADesign primers
1233049TAATTTATAATAATTTTAAATAAATAATAADesign primers
1239981GATAAAAATATAAAAAGTTAAAAADesign primers
1250191AAGAATAAAAAGCATAAAAAGAATAAAAAGAATAAADesign primers
1286360TGGTCCAGTCGGTCCAGTCGGTCCAGTCGGTCCAGTTGGCCCAGTTGGTCCGGTDesign primers
1286526CCAGTTGGC-CCAGTCGGT-CCAGTTGGT-CCAGTTGAT-CCAGTCGGC-CCAGTTGGTDesign primers
1286604GGTACAGTT-GGCCCAGTC-GGCCCAGTT-GGTCCAGTC-GGTCCAGTC-GGTCCAGTCDesign primers
1286671CAGTTGGCCCAGTCGGCCCAGTTGGTCCAGTCGGCCCAGTTGGTCDesign primers
1294699AGAACAACAAGAACAACAAGAAGAAGAGCAACAAGAAGAACAAGTAGADesign primers
1320634TTTCGGTTCTTTTGGTTCTTGCGGTTCDesign primers
1348960TTTTGAACGTTTATGTACGTTTTTGAAAGADesign primers
1359098TTCAGCAGGCTTTTGCTCAGCTGGTTTTTGTTCAGCCGGTTTTTGDesign primers
1359191TTCAGCAGGCTTTTGCTCGGCAGGTTTTTGCTCAGCCGGCTTTTGDesign primers
1499683AGAAGAAGAAAAACGAAGAAAAGAAGAAGAGAAGAGAAGGAAAGAAGAAGAACAACAACGAAADesign primers
1501237AGCACCAGT-AGCACCAGT-AGCGCCAGTDesign primers
1534409AAATATTT-AAATATTT-AAGTATTTDesign primers
1617747GTTCCCAGTAGATCCAGTGTTCCCAGTAGGTCCAGAGTTTCCGGTAGGTCCAGTDesign primers
1617875TACCAGTAGGTCCGGTGTTGCCGGAAGGTCCGGTGTTCCCAGTAGGTCCAGAGTDesign primers
1618128TCCAGTAGCTCCAGAGTCGCCGGTAGCTCCAGTGTCGCCGGTAGCTCCAGTGTCDesign primers
1618199TGCCAGTAGGTCCAGTAGTCCCAGTAACTCCAGTAGAGCCAGTAGGTCCAGTAGTCCCAGTAACTCCAGTAGDesign primers
1618326TCCAGTGATACCGGTAGGTCCGGTGTTTCCGGTAGGTCCGGTGATCCCAGTAGGDesign primers
1618393GTAGCTCCAGTGATCCCAGTAGGTCCGGTGATCCCAGTAGGTCCAGTAGTCCCADesign primers
1618591GTGTTGCCAGTAGGTCCAGTGTCGCCGGTAGCTCCAGTGATCCCAGTAGGTCCGGTGTTGCCAGTAGGTCCGGTGATCCCAGTAGGTCCAGTGTCGCCGGTAGCTCCAGTGATCCCAGTAGGTCCGGTGATCCCAGTAGGTCCADesign primers
1618912CCGGTAGCTCCGGTAGGTCCGGTAGCGDesign primers
1619032GTGTTGCCAGTAGGTCCAGTGTCGCCGGTAGCTCCAGTATCGCCAGTAGGTCCGGTGTTGCCAGTAGGTCCAGTGTCGCCGGTAGCTCCAGTGATACCAGTAGGTCCGGTGTTGCCAGTAGGTCCAGTGTTGCCGGTAGCTCCGDesign primers
1619177TAGGTCCGGTGTTGCCAGTAGGTCCGGTGTTACCAATAGCTCCAGTGTTGCCAGTAGGTCCGGTGTTGCCAGTAGGTCCAGTGTCGCCGGDesign primers
1681695TTTTTTTGTATTCTTTTTTATATTTTTGTADesign primers
1691477AAAAGGTCTTAAAAGATTTTAAAAGCCCTTDesign primers
1761147TATTAAATTATATTTAAATAAATTAAATTADesign primers
1774761TTGTAGGTTTTTGTATGATTTTGTAGGTTCDesign primers
2065497GACAAA-AAGAAA-AAGAAA-AAGAAA-AAGAAA-AAGAAA-AAGAAA-AAGAAADesign primers
2102436AACACCCATAA-AACACCCATAA-AACAGCCACAADesign primers
2102545TGAAACGAAATGAAACTATATAAAACGAAGDesign primers
2157659GTATAATCGCTGATATATTTTAAGAATCGCTGATATATTTGAATTATCGCCGATATAATTDesign primers
2278966AAGAAGCAAGAAGAACAAAAGAAACTAGAAGAGCAAAAGAAACAAGAAGAAGAAAAGAAACAAAATGAACAADesign primers
2376252CAACGGGAG-CAACAGGAG-TAACGGGAG-CAACAGGAG-CAACAGGAG-TAACGGGAG-CAACAGGAG-CAACAGGAG-CAACAGGAGDesign primers
2376360CAGCAGGAGCAACAGGAGCAACAGGAGDesign primers
2376397AACAGGAGT-AACGGGAGC-AACAGGAGC-AACAGGAGT-AACGGGAGC-AACAGGAGCDesign primers
2376452ACAGGAGCAACAGGGTCAACGGGAGCAACAGGATCAGCAGGAGCAACAGGAGCADesign primers
2376507CAGGAGTAACGGGAGCAA-CAGGAGTAACGGGAGCAA-CAGGAGCAACAGGAGTAA-CGGGAGCAACAGGAGCAA-CAGGAGTAACAGGGACAA-CAGGAGCAACGGGAGCAADesign primers
2376616GGGAGCAACAGGGGCAACAGGAGCAACGGGAGCAACAGGGGCAACAGGAGCAACGGGAGCAACAGGGGCAACAGGAGCAACAGGTCCAACDesign primers
2378270CGGCCCAACAGGAGCAACAGGGGCAACAGGAGCAACAGGCCCAACAGGAGCGACDesign primers
2378345CGGAGCAAC-AGGAGCAAC-AGGAGCAAC-AGGAGCAACDesign primers
2378463GGAGCAACAGGTTTAACAGGAGCAACAGGCTTAACAGGAGCAACAGGCCCAACAGGAGCAACAGGCCCAACAGGAGCGACAGGTCCAACAGGAGCAACAGGCCCAACADesign primers
2400372GGTTCAAGAAGTGATTCAAGACGTGGTTCGAGAAATGGCTCAAGAAGTDesign primers
2442100AAAGATAAAAATATAAAACGATAADesign primers
2500792GAA-TCA-TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAADesign primers
2665239AAAT-AAAT-AATT-AAAT-AATT-AAATDesign primers
2686285ATAAATATAAACATGAATATAAATDesign primers
2703917TGATTCGCAATCTTCTTTTTT-TGGTTCACAATCCTCTTTTTT-TGGCTCACAATCCTCTTTTTT-TGGCTCACAATCCTCTTTTTT-TGGCTCACAATCCTCTTTTTT-TGGTTCACAATCCTCTTTTTT-TGGTTCACAATCCTCTTTTTTDesign primers
2754891AGCAAAAGAGAT-TGCAAAAGAGAT-TGCAAAAGCGATDesign primers
2780511TGCTTTTGCTTCTTCTTTAGCTTTDesign primers
2844752GGAAATGAAAATGGAAAATGAAATDesign primers
2850482TATATATACTTTATATACAATATATACDesign primers
2865199TCACTTGCACTTTCTCTTTCAATTDesign primers
2955817TCCATGTCCGCCTTGCCAACC-ACCATGTCCGCCTTGCCAACC-ACCGTGTCCGCCCGGCCAACC-ACCATGTCCGCCTTGCCAACC-ACCATGTCCACCTTGCCAACC-ACCGTGTCCGCCTTGCCAACC-ACCGTGTCCGCCCGGCCAACC-ACCGTGTCCACCTTGCCAACC-ACCGTGTCCACCTTGCCAACC-ACCGTGCCCGCCTTGCCAACC-ACCATGCCCGCCTTGCCAACC-ACCGTGTCCACCTTGCCAACCDesign primers
2998059TATTTT-TAATTT-TAATTT-TAATTTDesign primers
3038037CCTTATTTTTCCTTAAATTTCATTGTTTTTDesign primers
3080236GCTTATAAGGGGCTTGGAAGGGGCTTGGAAGGGDesign primers
3109393GGTTGTTGCTCTTGTTGTTTCTCTTGTTGTTTCTCTDesign primers
3147814GTCGCTCCGGTTGCTCCGGTTGCTCCGDesign primers
3148312ATACCTTGTATACCTTGAATTCCTTGTDesign primers
3249844ATGAAATTATATCGACGATTTTTAAAATATATCAACGATTTTCTAAGTATATCGACGATTDesign primers
3268919TC-TT-TT-AT-TT-TC-TT-GT-TT-TT-TC-TA-TDesign primers
3516866CAACCATAAACATTCATAAATAACCAAAAACAATCACAAADesign primers
3582083GTTCTTCTTTCTTTGGCTCTTCTTTTTTCGATTCTTCTTTTTTTGGTTCCTCTTTTTTCGDesign primers
3642174CAATTCCAACTCCAATTGCAATTGDesign primers
3697104AATCTTCAAACCTTCAAATCTTCCDesign primers
3734025TGTGGTCAA-TGTGGTCAA-CGTGGTCAADesign primers
3761076TTTTTCTTTTCTTTTTTTCTGTTTTTTCTTDesign primers
3785075TCCTTTTCTTTTCCATTTTCTTTTTTCTTTTCTTTTDesign primers
3820418CAAGTGCAAGTCCAACTGCAAGTCDesign primers
3842405TCACAACCACAATCTCAATTACAADesign primers
3888912TTTTTGAACATTTATTGAACTTTTTTTGAATTTTTTCTGAAAATDesign primers
3971559TGCTCTGCAACTTGCATTGCAACTTGCTCTCCAATTDesign primers
4016749TTGTTTCTTTATTTG-ATGTTTCTTTATTTG-ATGTTTCCTTGTTTGDesign primers
4096668CAGCAACAATACCAACACCAATACCCGCAACAATATDesign primers
4150308TCAAATCAACGCAAATGAAATAAAADesign primers
4224659TTTTGCGGTTTCACCTGTACTTCCTTTTGTGGCTTCACTTGTATTTCCTTCTGTGGTTTTACCTGTACTTCTTTTTGTGGTTTCACTTGCATTTCCDesign primers
4256647AAATA-ATAAA-ATAAG-AAAAT-AAAADesign primers
4259349TCTTCTATTTCCTCTTCTTCTACTTCCTGCTCTTTTCTTTCTTCTDesign primers
4297554TTATCTTTATCCTTATTTTTATCATTATTTDesign primers
4315189CCCGTTGCTCCCGTTACTCCCGTTGCTDesign primers
4315243CCTGTTGAACCTGTTGCTCCGGTCGGACCTGTTGCTCCCGTTGGACCTGTTGCTCCCGTTGGACCCGTTGCTDesign primers
4315522CCTGTTGCT-CCTGTTGCT-CCCGTTGCTDesign primers
4315558CCTGTCGCTCCCGTTGAACCTGTCACTCCGGTTGGACCTGTTGCTCCCGTTGAADesign primers
4315648CCTGTTGCTCCCGTTATTCCTGTTGCTCCTGTTGCTCCCGTTGCTCCCGTTATTCCTGTTGCTCCTGTTGCTCCCGTTGCTCCCGTTATTDesign primers
4315739CTGTCGCTCCCGTTGAACCTGTCACTCCGGTTGGACCTGTTGCTCCCGTTGGACDesign primers
4315801CCAGTTGGACCTGTCGCTCCCGTTGGACCCGTTGCTCCCATTGGACCTGTCGCTCCCGTTGGACCCGTTGCTDesign primers
4331209CCTTGGTCGTTATTTCCACCTTGGTTGTCGTTTCCACCTTGATGGTCATTTCCACCTTGGTTGTCGTTTCCADesign primers
4331282CTTGGTTGTCATTTTCACCTTGGTTGTTGTTTCCACCTTGGTTGTTGTTTCCACCTTGGTTGTTGTTTCCACCTTGGTTGTCATTTTCGCDesign primers
4331752TCTCCGCCTGATTGTTTA-TCTCCGTCTGGTTGTTTG-CCTCCGTCTGGTTGTTTA-CCTCCGTCTGGTTGTTTA-CCTCCGTCTGGTTGTTTADesign primers
4331843CTCCGTCTGGTTGTTTGTCTCCGTCTGGTTGTTTATCTCCGTCTGGTTGTTTGCCTCCGTCTGGTTGTTTGTCTCCGTCTGGTTGTTTGTDesign primers
4345622ACTTACCGACATTTTCCGACATTTTCCGACDesign primers
4397360TAAAACAAAATAAAGTTAAAGAAAADesign primers
4415592TATTCTCTTATGCTCTTGTTCTCTDesign primers
4457347AAGAAGAAGAAGAAAAAGAGGAAGDesign primers
4471037GGTGTTTCTTCTGCAACTGGTTGTTCTTCTACAACTGGTTGTTCTTCTACAACTDesign primers
4502724TGGACCTTGAATCCCTTGCGGGCCTTGAATTCCTTGGGGACCTTGAATTCCTTGDesign primers
4503032CTCCGGTTGCTCCCGTTGCTCCGGTCGDesign primers
4513565GCTCCTGCTGCTGCCCCTGCTCCTDesign primers
4513646TATTGTTGGTGTTGTTGGTGTTGTTGGDesign primers
4513963GTGATGACCATGATGACCGTGCTGACCDesign primers
4513999GTGATGACCATGATGACCGTGCTGACCDesign primers
4546407ACTGGACCCACTGGCATCACCGGACCTACCGGCATCACTGGACCTTCTGGCATCACCGGATCCACTGGCATCACTGGACCCACTGGCATCACTGGACCCACTGGCATCDesign primers
4546891CTACTGGAAGCACCGGATCTACCGGAAGCACCGGACCCACTGGCATCACCGGATCTACTGGCATCACCGGATCTACTGGAAGCACTGGACDesign primers
4546982CACTGGCATCACTGGACCCACTGGCATCACTGGATCTACTGGCATCACTGGACCDesign primers
4547061AGCACTGGACCCACTGGCATCACTGGATCTACTGGCATCACTGGATCCACCGGCDesign primers
4547274GGAAGCACTGGACCCACTGGCATCACTGGGCCCACTGGCATCACTGGACCCACCDesign primers
4568761TCTGGTTTCACTTCCGGTTTTACTTCTGGTTTCGGTDesign primers
4591422AAAGAGGCATGGAAAAAGGTATGGAAAAAGGTATGGDesign primers
4768956TAAATTTTTATAGTTTTTTATAGATTCTTADesign primers
4849879GACAGGCCCAACTGGGGC-AACAGGCTCAACTGGGGC-AACAGGCTCAACTGGAGC-AACAGGTACAACTGGGGC-AACAGGCTCAACTGGGGC-AACAGGCTCAACTGGAGC-AACAGGCTCAACTGGGGC-AACAGGCTCAACTGGAGC-AACAGGCTCAACTGGGGC-AACAGGCTCAACTGGAGC-AACAGGCTCAACTGGAGC-AACAGGTCCAACTGGGGC-AACAGGCTCAACTGGAGC-AACAGGTCCAACTGGGGC-AACAGGTCCAACTGGGGC-AACAGGCTCAACTGGGGCDesign primers
4941091TTGTGC-TGGAGC-TTGTGC-TTGTGC-TTGTGC-TTGTGCDesign primers
4960213AAACAAGGC-AAACAGGAC-AAACAGGAT-AAACAGGAC-AAACAGGAT-AAACAGGACDesign primers
4993725AAAACAATAACAACAATAACAACAATADesign primers
5044269AAATAATTTCA-AAATAATTTCA-AAATAATTCAADesign primers
5046155TTCTTCGTTTTTCTTTATTTTTCTTCTATTDesign primers
5046201AT-AA-AA-AA-AT-AA-AA-AT-AC-AA-AA-AADesign primers
5047452TTCTTTTCTATACTTTTGTTTTGTTDesign primers
5064918GCCTTCGCTTTCGCCTTGGCCTTTDesign primers
5065019TGCCTTCGCCTTTGCTTTGGCCTTDesign primers
5065223CGCCTTCGTCTTCGCTTTGGCCTTDesign primers
5146115TTCTTTTTTTCGTTTTTTCCTTTTDesign primers

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