Microsatellites /Tandem Repeats database

Genome: Escherichia coli IAI39

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
57058CTGGCGGTGGCGCTGTCGATGGCGDesign primers
157550GGGAAGACAGGAGGAAAGGCAGGAGGTAAGACCGGAGGTAAGACAGGADesign primers
664086GCACTGGCGCTGGGACTGGCACAGDesign primers
665262GGGTGAGGGTTAGGGTGAGGGGGADesign primers
756542AGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGDesign primers
756588TGCAAAAGCAGCAGCTGAAAAAGCCGCTGCAGCAAAAGCTGCCGCDesign primers
789055GTTAAGA-CTCAAGA-CTCAAGA-CTCAAGA-CTCAAGA-CTCAAGA-CTCAAGA-CTCAAGADesign primers
969971ATGCTC-ATGATC-ATGCTC-GTGCTC-GTGCTCDesign primers
1193442ACCAGCAACCAGCGACCGGCAGCCAGCADesign primers
1562480TACAGAGAATACAACAGAGATTACTACAGAGAATAADesign primers
1785414GATGGTGGCAATACCCCTGACGATGGCGGCAATACTCCTGACGATGGCGGCAACACACCGGACDesign primers
1785504GGCAATACCCCTGACGATGGTGGGAATACTCCTGACGATGGCGGCAACACACCGGATGATGGTGGGAATACTCCTGACGATGGTGGGAATACTCCTGACGATGGCDesign primers
1836605TGCCAGTGCCATTGTCAGTACCAGDesign primers
2185354GGCGCATAAACTGGCGTATCAACTGGCCGATAAACTDesign primers
2424969TTATATGCCTTTATTTGCTTTTTTATGCCADesign primers
3209430TGGTGTTGATGTTGGTTTTGATGTDesign primers
3328197TTATATATTTTCATTTATTTTAATAAATTTDesign primers
3371398GTTGTGATGTTGTGTTGTTGTGTTDesign primers
3568451GCAGCAGCATCAGCAGCGCCAGCADesign primers
3656598CCTTTGCTTTCTTTTCCTTGCGTTTDesign primers
3816589CGCACGGCCAGCACGGCCCGCACGACCDesign primers
3841240CGTCACCGC-CGTCACCGC-CGTCGCCGCDesign primers
3996228TT-TT-TG-TT-TT-AT-TT-TT-TG-TT-TT-TA-TT-TT-TTDesign primers
4396672ATGAAGGAG-AAGGTGGAG-AAGGTGGAG-AAGGTGGAG-AAGGTGGAG-AAGGTGGAGDesign primers
4722267CACGCTGCC-CACGCTGCC-CACGCTGTCDesign primers
4784985TCTGTGTTT-GCTGTGTTT-GCTGTGTTT-GCTGTGTTT-GCTGTGTTTDesign primers
4812195ATGGGCGGCATGGGTGGCATGGGCGGCDesign primers
5111004AAGCGGCGAAAGCGGTGAAAGCGGCAADesign primers

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